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preparing CRAN submission
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jchiquet committed Jun 21, 2023
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2 changes: 1 addition & 1 deletion NEWS.md
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# PLNmodels 1.0.2 (2023-06-20)
# PLNmodels 1.0.2 (2023-06-21)

* changed initial value in optim for variational variance (1 -> 0.1),
which caused failure in some cases
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15 changes: 6 additions & 9 deletions cran-comments.md
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Submitting PLNmodels version 1.0.1 to CRAN
Submitting PLNmodels version 1.0.2 to CRAN

* fix in the use of future_lapply which used to make postTreatment in PLNPCA last for ever with multicore in v1.0.0...
* prevent use of bootstrap/jackknife when not appropriate
* fix bug in PLNmixture() when the sequence of cluster numbers (`clusters`) is not of the form `1:K_max`
* use bibentry to replace citEntry in CITATION
* changed initial value in optim for variational variance (1 -> 0.1),
which caused failure in some cases
* fix bug when using inception in PLNnetwork()
* starting handling of missing data
* slightly faster (factorized) initialization for PCA

## Tested environments

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- Windows Server 2022, R-release, 64 bit
- Windows Server 2022, R-old, 64 bit

* tested remotely with R-hub
- Windows Server 2022, R-devel, 64 bit
- Ubuntu Linux 22.04 LTS, R-release, GCC

* tested remotely with github-action
- Linux Ubuntu 22.04, R-release
- Linux Ubuntu 22.04, R-oldrel
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5 changes: 3 additions & 2 deletions inst/WORDLIST
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arg
barebone
benthos
bibentry
bigg
bioconductor
biom
biomformat
boldsymbol
caddisflies
caughts
citEntry
cloneable
coercible
compositional
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grey
gtable
http
https
i'j
ie
igraph
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indep
instable
intercal
io
ixed
kmeans
knitr
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nloptr
normalisation
ofposterior
optim
optimizers
ot
overset
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