formatter

.opentrons_config/config.json

@@ -0,0 +1,18 @@
+{
+  "labware_database_file": "/config/opentrons.db",
+  "labware_calibration_offsets_dir_v2": "/config/labware/v2/offsets",
+  "labware_user_definitions_dir_v2": "/config/labware/v2/custom_definitions",
+  "feature_flags_file": "/config/feature_flags.json",
+  "robot_settings_file": "/config/robot_settings.json",
+  "deck_calibration_file": "/config/deck_calibration.json",
+  "log_dir": "/config/logs",
+  "api_log_file": "/config/logs/api.log",
+  "serial_log_file": "/config/logs/serial.log",
+  "wifi_keys_dir": "/config/user_storage/opentrons_data/network_keys",
+  "hardware_controller_lockfile": "/config/hardware.lock",
+  "pipette_config_overrides_dir": "/config/pipettes",
+  "tip_length_calibration_dir": "/config/tip_lengths",
+  "robot_calibration_dir": "/config/robot",
+  "pipette_calibration_dir": "/config/robot/pipettes",
+  "custom_tiprack_dir": "/config/tip_lengths/custom_tiprack_definitions"
+}

.opentrons_config/feature_flags.json

@@ -0,0 +1,17 @@
+{
+  "shortFixedTrash": null,
+  "calibrateToBottom": null,
+  "deckCalibrationDots": null,
+  "useProtocolApi2": null,
+  "disableHomeOnBoot": null,
+  "useOldAspirationFunctions": null,
+  "enableDoorSafetySwitch": null,
+  "enableTipLengthCalibration": null,
+  "enableHttpProtocolSessions": null,
+  "enableFastProtocolUpload": null,
+  "enableProtocolEngine": null,
+  "disableLogAggregation": null,
+  "enableApi1BackCompat": null,
+  "useV1HttpApi": null,
+  "_version": 9
+}

.opentrons_config/pipettes/P20SV202020070101.json

@@ -0,0 +1 @@
+{ "model": "p20_single_v2.0" }

.opentrons_config/pipettes/P3HMV202020041605.json

@@ -0,0 +1 @@
+{ "model": "p20_multi_v2.0" }

CONTRIBUTING.md

@@ -1,4 +1,3 @@
-
 # Contributing Guide
 
 Thanks for your interest in contributing to the Opentrons platform! This Contributing Guide is intended to ensure best practices for both internal Opentrons contributors as well as any external contributors. We want to make sure you’re set up to contribute effectively, no matter if you’re helping us out with bug reports, code, documentation, feature suggestions, or anything else. This guide covers:
@@ -150,6 +149,7 @@ Your computer will need the following tools installed to be able to develop with
   ```
 
   **MacOS Big Sur Note:** due to this [known issue](https://github.com/pyenv/pyenv/issues/1737) we recommend using:
+
   ```shell
   pyenv install 3.7.10
   ```

DOCKER.md

@@ -4,25 +4,25 @@ Included in this repo are the tools to run a containerized Opentrons robot stack
 
 This includes the `robot-server` connected to the hardware emulation application. The emulation application includes the Smoothie and magnetic, temperature, and thermocycler modules.
 
-Requirements
-------------------
+## Requirements
+
 - A clone of this repo.
 - An installation [docker](https://docs.docker.com/get-docker/)
 - An installation of [docker-compose](https://docs.docker.com/compose/install/)
 
-How to use
---------------
+## How to use
+
 Start a terminal and change directory to the root of this repo.
 
-1) Build
-Enter ```docker-compose build --force-rm``` at the terminal.
+1. Build
+   Enter `docker-compose build --force-rm` at the terminal.
+
+2. Run
+   Enter `docker-compose up` at the terminal. _The build and run stages can be combined `docker-compose up --build`._
 
-2) Run
-Enter ```docker-compose up```  at the terminal.  *The build and run stages can be  combined  ```docker-compose up --build```.*
+3. Start the Opentrons application. The docker container will appear as `dev`. Connect and run just as you would on a robot.
 
-3) Start the Opentrons application. The docker container will appear as `dev`. Connect and run just as you would on a robot.
+## Known Issues
 
-Known Issues
----
 - Pipettes cannot be changed at run time.
-- Pipettes are fixed as `p20_multi_v2.0` on the left mount and `p20_single_v2.0` on the right. 
+- Pipettes are fixed as `p20_multi_v2.0` on the left mount and `p20_single_v2.0` on the right.

docker-compose.yml

@@ -1,27 +1,27 @@
-version: "3"
+version: '3'
 services:
   emulator:
     build: .
     command: python3 -m opentrons.hardware_control.emulation.app
     ports:
-     - "9996:9996"
-     - "9997:9997"
-     - "9998:9998"
-     - "9999:9999"
+      - '9996:9996'
+      - '9997:9997'
+      - '9998:9998'
+      - '9999:9999'
   robot-server:
     build: .
     command: uvicorn "robot_server:app" --host 0.0.0.0 --port 31950 --ws wsproto --reload
     ports:
-     - "31950:31950"
+      - '31950:31950'
     environment:
-     - OT_API_CONFIG_DIR=/config
-     - OT_SMOOTHIE_EMULATOR_URI=socket://emulator:9996
-     - OT_THERMOCYCLER_EMULATOR_URI=socket://emulator:9997
-     - OT_TEMPERATURE_EMULATOR_URI=socket://emulator:9998
-     - OT_MAGNETIC_EMULATOR_URI=socket://emulator:9999
+      - OT_API_CONFIG_DIR=/config
+      - OT_SMOOTHIE_EMULATOR_URI=socket://emulator:9996
+      - OT_THERMOCYCLER_EMULATOR_URI=socket://emulator:9997
+      - OT_TEMPERATURE_EMULATOR_URI=socket://emulator:9998
+      - OT_MAGNETIC_EMULATOR_URI=socket://emulator:9999
     links:
-      - "emulator"
+      - 'emulator'
     depends_on:
-      - "emulator"
+      - 'emulator'
     volumes:
       - .opentrons_config:/config:rw