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Bump the dependencies group with 3 updates #193

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@dependabot dependabot bot commented on behalf of github Oct 22, 2023

Bumps the dependencies group with 3 updates: h5py, numpy and psutil.

Updates h5py from 3.9.0 to 3.10.0

Commits

Updates numpy from 1.22.0 to 1.22.4

Release notes

Sourced from numpy's releases.

v1.22.4

NumPy 1.22.4 Release Notes

NumPy 1.22.4 is a maintenance release that fixes bugs discovered after the 1.22.3 release. In addition, the wheels for this release are built using the recently released Cython 0.29.30, which should fix the reported problems with debugging.

The Python versions supported for this release are 3.8-3.10. Note that the Mac wheels are now based on OS X 10.15 rather than 10.6 that was used in previous NumPy release cycles.

Contributors

A total of 12 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • Alexander Shadchin
  • Bas van Beek
  • Charles Harris
  • Hood Chatham
  • Jarrod Millman
  • John-Mark Gurney +
  • Junyan Ou +
  • Mariusz Felisiak +
  • Ross Barnowski
  • Sebastian Berg
  • Serge Guelton
  • Stefan van der Walt

Pull requests merged

A total of 22 pull requests were merged for this release.

  • #21191: TYP, BUG: Fix np.lib.stride_tricks re-exported under the...
  • #21192: TST: Bump mypy from 0.931 to 0.940
  • #21243: MAINT: Explicitly re-export the types in numpy._typing
  • #21245: MAINT: Specify sphinx, numpydoc versions for CI doc builds
  • #21275: BUG: Fix typos
  • #21277: ENH, BLD: Fix math feature detection for wasm
  • #21350: MAINT: Fix failing simd and cygwin tests.
  • #21438: MAINT: Fix failing Python 3.8 32-bit Windows test.
  • #21444: BUG: add linux guard per #21386
  • #21445: BUG: Allow legacy dtypes to cast to datetime again
  • #21446: BUG: Make mmap handling safer in frombuffer
  • #21447: BUG: Stop using PyBytesObject.ob_shash deprecated in Python 3.11.
  • #21448: ENH: Introduce numpy.core.setup_common.NPY_CXX_FLAGS
  • #21472: BUG: Ensure compile errors are raised correclty
  • #21473: BUG: Fix segmentation fault

... (truncated)

Commits
  • 08772f9 Merge pull request #21549 from charris/prepare-for-1.22.4-1
  • f15e388 REL: Prepare for the NumPy 1.22.4 release, second try.
  • 60f2f4d Merge pull request #21547 from charris/fix-pypy-wheel-failures
  • dcc92ae MAINT: Skip tests that fail on PyPy.
  • 99766d3 Merge pull request #21541 from charris/prepare-for-1.22.4
  • 5427694 REL: Prepare for NumPy 1.22.4 release.
  • c0d84f1 Merge pull request #21536 from charris/backport-21534
  • dca51c7 BUG: Fix GCC error during build configuration
  • 3c13dad Merge pull request #21525 from charris/backport-21514
  • 14be617 MAINT: Update Cython version to 0.29.29.
  • Additional commits viewable in compare view

Updates psutil from 5.9.5 to 5.9.6

Changelog

Sourced from psutil's changelog.

5.9.6

2023-10-15

Enhancements

  • 1703_: cpu_percent()_ and cpu_times_percent()_ are now thread safe, meaning they can be called from different threads and still return meaningful and independent results. Before, if (say) 10 threads called cpu_percent(interval=None) at the same time, only 1 thread out of 10 would get the right result.
  • 2266_: if Process_ class is passed a very high PID, raise NoSuchProcess_ instead of OverflowError. (patch by Xuehai Pan)
  • 2246_: drop python 3.4 & 3.5 support. (patch by Matthieu Darbois)
  • 2290_: PID reuse is now pre-emptively checked for Process.ppid()_ and Process.parents()_.
  • 2312_: use ruff Python linter instead of flake8 + isort. It's an order of magnitude faster + it adds a ton of new code quality checks.

Bug fixes

  • 2195_, [Linux]: no longer print exception at import time in case /proc/stat can't be read due to permission error. Redirect it to PSUTIL_DEBUG instead.
  • 2241_, [NetBSD]: can't compile On NetBSD 10.99.3/amd64. (patch by Thomas Klausner)
  • 2245_, [Windows]: fix var unbound error on possibly in swap_memory()_ (patch by student_2333)
  • 2268_: bytes2human() utility function was unable to properly represent negative values.
  • 2252_, [Windows]: disk_usage()_ fails on Python 3.12+. (patch by Matthieu Darbois)
  • 2284_, [Linux]: Process.memory_full_info()_ may incorrectly raise ZombieProcess_ if it's determined via /proc/pid/smaps_rollup. Instead we now fallback on reading /proc/pid/smaps.
  • 2287_, [OpenBSD], [NetBSD]: Process.is_running()_ erroneously return False for zombie processes, because creation time cannot be determined.
  • 2288_, [Linux]: correctly raise ZombieProcess_ on Process.exe(), Process.cmdline() and Process.memory_maps()_ instead of returning a "null" value.
  • 2290_: differently from what stated in the doc, PID reuse is not pre-emptively checked for Process.nice()_ (set), Process.ionice(), (set), Process.cpu_affinity() (set), Process.rlimit()_ (set), Process.parent()_.
  • 2308_, [OpenBSD]: Process.threads()_ always fail with AccessDenied (also as root).
Commits

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Bumps the dependencies group with 3 updates: [h5py](https://github.com/h5py/h5py), [numpy](https://github.com/numpy/numpy) and [psutil](https://github.com/giampaolo/psutil).


Updates `h5py` from 3.9.0 to 3.10.0
- [Release notes](https://github.com/h5py/h5py/releases)
- [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst)
- [Commits](h5py/h5py@3.9.0...3.10.0)

Updates `numpy` from 1.22.0 to 1.22.4
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](numpy/numpy@v1.22.0...v1.22.4)

Updates `psutil` from 5.9.5 to 5.9.6
- [Changelog](https://github.com/giampaolo/psutil/blob/master/HISTORY.rst)
- [Commits](giampaolo/psutil@release-5.9.5...release-5.9.6)

---
updated-dependencies:
- dependency-name: h5py
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: dependencies
- dependency-name: numpy
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: dependencies
- dependency-name: psutil
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: dependencies
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added the dependencies Pull requests that update a dependency file label Oct 22, 2023
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coveralls commented Oct 22, 2023

Pull Request Test Coverage Report for Build 6605705660

  • 0 of 0 changed or added relevant lines in 0 files are covered.
  • 2 unchanged lines in 1 file lost coverage.
  • Overall coverage decreased (-0.05%) to 90.556%

Files with Coverage Reduction New Missed Lines %
sed/calibrator/energy.py 2 91.86%
Totals Coverage Status
Change from base Build 6605621666: -0.05%
Covered Lines: 4296
Relevant Lines: 4744

💛 - Coveralls

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dependabot bot commented on behalf of github Oct 22, 2023

Dependabot tried to update this pull request, but something went wrong. We're looking into it, but in the meantime you can retry the update by commenting @dependabot rebase.

@rettigl rettigl closed this Oct 22, 2023
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dependabot bot commented on behalf of github Oct 22, 2023

This pull request was built based on a group rule. Closing it will not ignore any of these versions in future pull requests.

@dependabot dependabot bot deleted the dependabot/pip/dependencies-604b47c43d branch October 22, 2023 20:14
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