update all workflows to use caches

.github/workflows/linting.yml

@@ -0,0 +1,33 @@
+name: linting
+
+# Triggers the workflow on push for all branches
+on: [push]
+
+jobs:
+  lint:
+    runs-on: ubuntu-latest
+    steps:
+      # Check out repo and set up Python
+      - uses: actions/checkout@v3
+        with:
+          lfs: true
+
+      # Use cached python and dependencies, install poetry
+      - name: "Setup Python, Poetry and Dependencies"
+        uses: packetcoders/action-setup-cache-python-poetry@main
+        with:
+          python-version: 3.8
+          poetry-version: 1.2.2
+
+      # Linting steps, excute all linters even if one fails
+      - name: pycodestyle
+        run:
+          poetry run pycodestyle --ignore=E203,E501,W503 sed tests
+      - name: pylint
+        if: ${{ always() }}
+        run:
+          poetry run pylint --good-names=i,j,k,ex,x,y,t,k,v,ax,df,ec,mc,dc,ct --disable=fixme,too-many-branches,too-many-locals,too-many-statements,too-many-arguments,too-many-lines,too-many-public-methods,too-many-instance-attributes,too-few-public-methods sed tests
+      - name: mypy
+        if: ${{ always() }}
+        run:
+          poetry run mypy --ignore-missing-imports --follow-imports=silent --no-strict-optional sed tests

.github/workflows/testing.yml

@@ -0,0 +1,30 @@
+name: pytest
+
+on:
+  pull_request
+
+jobs:
+  pytest:
+    runs-on: ubuntu-latest
+    steps:
+      # Check out repo and set up Python
+      - name: Check out the repository
+        uses: actions/checkout@v4
+        with:
+          lfs: true
+
+      # Use cached python and dependencies, install poetry
+      - name: "Setup Python, Poetry and Dependencies"
+        uses: packetcoders/action-setup-cache-python-poetry@main
+        with:
+          python-version: 3.8
+          poetry-version: 1.2.2
+
+      # Run pytest with coverage report and upload results to coveralls
+      - name: Run tests on python 3.8
+        run: |
+          poetry run pytest --cov=sed -n auto tests/
+      - name: Coveralls
+        uses: coverallsapp/github-action@v2
+        with:
+          github-token: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/testing_multiversion.yml

@@ -0,0 +1,51 @@
+name: pytest multiversion
+
+on:
+  push:
+    branches: [ main ]
+
+jobs:
+  pytest:
+    # Using matrix strategy
+    strategy:
+      matrix:
+        python-version: ["3.8", "3.9", "3.10"]
+    runs-on: ubuntu-latest
+    steps:
+      # Check out repo and set up Python
+      - name: Check out the repository
+        uses: actions/checkout@v4
+        with:
+          lfs: true
+
+      - name: "Setup Python, Poetry and Dependencies"
+        uses: packetcoders/action-setup-cache-python-poetry@main
+        with:
+          python-version: ${{matrix.python-version}}
+          poetry-version: 1.2.2
+
+      # Use cached python and dependencies, install poetry
+      - name: Run tests on python ${{matrix.python-version}}
+        run: |
+          poetry run pytest --cov=sed -n auto tests/
+
+      # run this job after each pytest job is finished
+      - name: Coveralls Parallel
+        uses: coverallsapp/github-action@v2
+        with:
+          flag-name: run-${{ join(matrix.*, '-') }}
+          parallel: true
+
+  # run this job after all the pytest jobs are finished
+  # coveralls will combine the coverage reports and upload to coveralls.io
+  finish:
+    needs: pytest
+    if: ${{ always() }}
+    runs-on: ubuntu-latest
+    steps:
+    - name: Coveralls Finished
+      uses: coverallsapp/github-action@v2
+      with:
+        github-token: ${{ secrets.GITHUB_TOKEN }}
+        parallel-finished: true
+        carryforward: "run-3.8,run-3.9,run-3.10"

.github/workflows/update_requirements.yml

@@ -0,0 +1,36 @@
+name: update docs/requirements.txt for readthedocs
+
+on:
+  # Triggers the workflow on push but only for the main branch 
+  # and only for changes to the poetry.lock file
+  push:
+    branches: [ main ]
+    paths: [poetry.lock]
+
+jobs:
+  pytest:
+    runs-on: ubuntu-latest
+    steps:
+      # Check out repo and set up Python
+      - name: Check out the repository
+        uses: actions/checkout@v4
+        with:
+          lfs: true
+
+      # Use cached python and dependencies, install poetry
+      - name: "Setup Python, Poetry and Dependencies"
+        uses: packetcoders/action-setup-cache-python-poetry@main
+        with:
+          python-version: 3.8
+          poetry-version: 1.2.2
+
+      #  Generates and commits a requirements.txt used by readthedocs
+      - name: Export requirements.txt
+        run: poetry export --without-hashes --format=requirements.txt -o docs/requirements.txt -E docs -E notebook
+
+      - name: Commit changes
+        uses: EndBug/add-and-commit@v9
+        with:
+          default_author: github_actions
+          message: 'Updating requirements for docs'
+          add: 'docs/requirements.txt'