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import os | ||
from importlib.util import find_spec | ||
from pathlib import Path | ||
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import pytest | ||
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from sed.core.config import parse_config | ||
from sed.loader.flash.loader import FlashLoader | ||
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package_dir = os.path.dirname(find_spec("sed").origin) | ||
config_path = os.path.join(package_dir, "../tests/data/loader/flash/config.yaml") | ||
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@pytest.fixture | ||
def config_file(): | ||
return parse_config(config_path) | ||
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def test_get_channels_by_format(config_file): | ||
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fl = FlashLoader(config_file) | ||
electron_channels = ["dldPosX", "dldPosY", "dldTimeSteps"] | ||
pulse_channels = [ | ||
"sampleBias", | ||
"tofVoltage", | ||
"extractorVoltage", | ||
"extractorCurrent", | ||
"cryoTemperature", | ||
"sampleTemperature", | ||
"dldTimeBinSize", | ||
] | ||
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# Call get_channels_by_format method | ||
format_electron = fl.get_channels_by_format(["per_electron"]) | ||
format_pulse = fl.get_channels_by_format(["per_pulse"]) | ||
format_both = fl.get_channels_by_format(["per_pulse", "per_electron"]) | ||
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assert set(electron_channels) == set(format_electron) | ||
assert set(pulse_channels) == set(format_pulse) | ||
assert set(electron_channels + pulse_channels) == set(format_both) | ||
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@pytest.mark.parametrize( | ||
"sub_dir", | ||
["online-0/fl1user3/", "express-0/fl1user3/", "FL1USER3/"], | ||
) | ||
def test_initialize_paths(config_file, fs, sub_dir): | ||
config = config_file | ||
del config["core"]["paths"] | ||
config["core"]["beamtime_id"] = "12345678" | ||
config["core"]["year"] = "2000" | ||
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# find base path of beamline from config. here we use pg2 | ||
base_path = config["dataframe"]["beamtime_dir"]["pg2"] | ||
expected_path = ( | ||
Path(base_path) / config["core"]["year"] / "data" / config["core"]["beamtime_id"] | ||
) | ||
# create expected paths | ||
expected_raw_path = expected_path / "raw" / "hdf" / sub_dir | ||
expected_processed_path = expected_path / "processed" / "parquet" | ||
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# create fake file system for testing | ||
fs.create_dir(expected_raw_path) | ||
fs.create_dir(expected_processed_path) | ||
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# instance of class with correct config and call initialize_paths | ||
fl = FlashLoader(config=config) | ||
data_raw_dir, data_parquet_dir = fl.initialize_paths() | ||
print(data_raw_dir) | ||
assert expected_raw_path == data_raw_dir[0] | ||
assert expected_processed_path == data_parquet_dir |