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diff --git a/sed/develop/_modules/index.html b/sed/develop/_modules/index.html
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diff --git a/sed/develop/_sources/user_guide/index.md.txt b/sed/develop/_sources/user_guide/index.md.txt
@@ -6,23 +6,24 @@ myst:
 ---
 # User Guide
 
+## Installing SED
 ```{toctree}
-:caption: Installing SED
 :maxdepth: 1
 installation
 ```
 
+## Basic concepts
 ```{toctree}
-:caption: Basic concepts
 :maxdepth: 1
 ../tutorial/1_binning_fake_data
 ../tutorial/2_conversion_pipeline_for_example_time-resolved_ARPES_data
 ../tutorial/3_metadata_collection_and_export_to_NeXus
 config
 ```
 
+## Advanced Topics
+
 ```{toctree}
 :maxdepth: 1
-:caption: Advanced Topics
 advanced_topics
 ```
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diff --git a/sed/develop/index.html b/sed/develop/index.html
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@@ -401,15 +400,9 @@ <h2>User guide<a class="headerlink" href="#user-guide" title="Permalink to this
 <div class="toctree-wrapper compound">
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="user_guide/index.html">User Guide</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="user_guide/installation.html">Installation</a></li>
-<li class="toctree-l2"><a class="reference internal" href="user_guide/installation.html#development-version">Development version</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorial/1_binning_fake_data.html">Binning demonstration on locally generated fake data</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorial/2_conversion_pipeline_for_example_time-resolved_ARPES_data.html">Demonstration of the conversion pipeline using time-resolved ARPES data stored on Zenodo</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorial/3_metadata_collection_and_export_to_NeXus.html">Binning with metadata generation, and storing into a NeXus file</a></li>
-<li class="toctree-l2"><a class="reference internal" href="user_guide/config.html">Configuration</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorial/6_binning_with_time-stamped_data.html">Binning of temperature-dependent ARPES data using time-stamped external temperature data</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorial/7_correcting_orthorhombic_symmetry.html">Distortion correction with orthorhombic symmetry</a></li>
-<li class="toctree-l2"><a class="reference internal" href="tutorial/8_jittering_tutorial.html">Correct use of Jittering</a></li>
+<li class="toctree-l2"><a class="reference internal" href="user_guide/index.html#installing-sed">Installing SED</a></li>
+<li class="toctree-l2"><a class="reference internal" href="user_guide/index.html#basic-concepts">Basic concepts</a></li>
+<li class="toctree-l2"><a class="reference internal" href="user_guide/index.html#advanced-topics">Advanced Topics</a></li>
 </ul>
 </li>
 </ul>
@@ -420,8 +413,7 @@ <h2>Examples<a class="headerlink" href="#examples" title="Permalink to this head
 <p>Several example notebooks to demonstrate the functionality of SED for end-to-end data analysis workflows.</p>
 <div class="toctree-wrapper compound">
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="workflows/index.html">Workflows</a><ul>
-<li class="toctree-l2"><a class="reference internal" href="tutorial/4_hextof_workflow.html">Tutorial for binning data from the HEXTOF instrument at FLASH</a></li>
+<li class="toctree-l1"><a class="reference internal" href="workflows/index.html">Workflows</a><ul class="simple">
 </ul>
 </li>
 </ul>

diff --git a/sed/develop/misc/contributing.html b/sed/develop/misc/contributing.html
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