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Fixing bioc3.19 #15

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wants to merge 3 commits into from
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Fixing bioc3.19 #15

wants to merge 3 commits into from

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PeteHaitch
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WIP not ready for merging.

- Changes required seem to be due to changes to clustering results for `sce.nest`.
- Slingshot now yields 4 trajectories instead of 3
- 'first' path now becomes 'second' path
- This is broken by the changes to trajectors (which were created by changes to the clustering of sce.nest)
@PeteHaitch PeteHaitch self-assigned this Jan 15, 2024
@lgeistlinger
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Is this one still relevant @PeteHaitch or can be closed?

@PeteHaitch PeteHaitch closed this Apr 18, 2024
@PeteHaitch
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Some of the changes in trajectory.Rmd might still be applicable, but I never fully resolved it so there will still need to be further changes made I expect.
The changes in cell-cycle.Rmd are no longer applicable.
Closing this.

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