fkessler docker

Docker container for running simple Fkessler case.

• Use bioconda cesm docker as a base image.
• Input dataset available on zenodo:

Running Fkessler with docker

Make sure inputdata is available (it won't download it as we suppose it is already on disk).

• The location of the inputdata is /opt/uio/inputdata
• Model outputs are stored in /opt/uio/archive along with the cases folder (it can be interesting to check timing).

Important: the folder /opt/uio/archive needs to be writable by unix group users (see Dockerfile) otherwise you will get a permission denied when running.

sudo chgrp -R users /opt/uio/archive
sudo chmod -R g+w /opt/uio/archive

You can check it:

ls -lrt /opt/uio | grep archive

You should have:

drwxrwxr-x.  8 centos users        4096 Nov  9 15:21 archive

Pull the docker image locally

docker pull nordicesmhub/cesm_fkessler:latest

You can use the following command to check your image is locally available:

docker images

It should return:

REPOSITORY                   TAG                     IMAGE ID            CREATED             SIZE
nordicesmhub/cesm_fkessler   latest                  d4847f70444a        7 days ago          1.79GB

Run the model

docker run -i -v /opt/uio/inputdata:/home/cesm/inputdata -v /opt/uio/archive:/home/cesm/archive  -t nordicesmhub/cesm_fkessler:latest

Visualize outputs

The model outputs are in /opt/uio/archive (or any path you specify when running your model). Please note that this folder needs to exist before you run your model.