NixOS · FRidh · Dec 30, 2019 · Dec 19, 2019 · Dec 19, 2019 · Dec 19, 2019
diff --git a/pkgs/applications/version-management/nbstripout/default.nix b/pkgs/applications/version-management/nbstripout/default.nix
@@ -1,14 +1,14 @@
-{lib, python2Packages, git, mercurial, coreutils}:
+{lib, python, git, mercurial, coreutils}:
 
-with python2Packages;
+with python.pkgs;
 buildPythonApplication rec {
   version = "0.3.6";
   pname = "nbstripout";
 
   # Mercurial should be added as a build input but because it's a Python
   # application, it would mess up the Python environment. Thus, don't add it
   # here, instead add it to PATH when running unit tests
-  checkInputs = [ pytest pytest-flake8 pytest-cram git ];
+  checkInputs = [ pytest pytest-flake8 git ];
   nativeBuildInputs = [ pytestrunner ];
   propagatedBuildInputs = [ ipython nbformat ];
 

diff --git a/pkgs/development/interpreters/python/wrap.sh b/pkgs/development/interpreters/python/wrap.sh
@@ -84,10 +84,10 @@ wrapPythonProgramsIn() {
                     # We need to support both the case when makeWrapperArgs
                     # is an array and a IFS-separated string.
                     # TODO: remove the string branch when __structuredAttrs are used.
-                    if [[ "$(declare -p makeWrapperArgs)" =~ ^'declare -a makeWrapperArgs=' ]]; then
+                    if [[ "${makeWrapperArgs+defined}" == "defined" && "$(declare -p makeWrapperArgs)" =~ ^'declare -a makeWrapperArgs=' ]]; then
                         local -a user_args=("${makeWrapperArgs[@]}")
                     else
-                        local -a user_args="($makeWrapperArgs)"
+                        local -a user_args="(${makeWrapperArgs:-})"
                     fi
 
                     local -a wrapProgramArgs=("${wrap_args[@]}" "${user_args[@]}")

diff --git a/pkgs/development/python-modules/Babel/default.nix b/pkgs/development/python-modules/Babel/default.nix
@@ -11,14 +11,10 @@ buildPythonPackage rec {
 
   propagatedBuildInputs = [ pytz ];
 
-  checkInputs = [ pytest freezegun glibcLocales ];
+  checkInputs = [ pytest freezegun ];
 
   doCheck = !stdenv.isDarwin;
 
-  preCheck = ''
-    export LC_ALL="en_US.UTF-8"
-  '';
-
   meta = with lib; {
     homepage = http://babel.edgewall.org;
     description = "A collection of tools for internationalizing Python applications";

diff --git a/pkgs/development/python-modules/JPype1/default.nix b/pkgs/development/python-modules/JPype1/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "JPype1";
-  version = "0.7.0";
+  version = "0.7.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1630439d5b0fb49e2878b43a1a1f074f9d4f46520f525569e14f1f0f9399f871";
+    sha256 = "c16d01cde9c2c955d76d45675e64b06c3255784d49cea4147024e99a01fbbb18";
   };
 
   patches = [ ./set-compiler-language.patch ];

diff --git a/pkgs/development/python-modules/Pygments/default.nix b/pkgs/development/python-modules/Pygments/default.nix
@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "Pygments";
-  version = "2.4.2";
+  version = "2.5.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "15v2sqm5g12bqa0c7wikfh9ck2nl97ayizy1hpqhmws5gqalq748";
+    sha256 = "98c8aa5a9f778fcd1026a17361ddaf7330d1b7c62ae97c3bb0ae73e0b9b6b0fe";
   };
 
   propagatedBuildInputs = [ docutils ];

diff --git a/pkgs/development/python-modules/Rtree/default.nix b/pkgs/development/python-modules/Rtree/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "Rtree";
-  version = "0.9.2";
+  version = "0.9.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "6a34b25f588e1563e45af251a8469b43a125d972eb2fa66e9ce96ed29f06c454";
+    sha256 = "55c046a98e8d84235792de1f18635f680d7b4085264fbced6b073f28fcbe353a";
   };
 
   propagatedBuildInputs = [ libspatialindex ];

diff --git a/pkgs/development/python-modules/absl-py/default.nix b/pkgs/development/python-modules/absl-py/default.nix
@@ -8,11 +8,11 @@
 
 buildPythonPackage rec {
   pname = "absl-py";
-  version = "0.8.1";
+  version = "0.9.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "d9129186431e150d7fe455f1cb1ecbb92bb5dba9da9bc3ef7b012d98c4db2526";
+    sha256 = "75e737d6ce7723d9ff9b7aa1ba3233c34be62ef18d5859e706b8fdc828989830";
   };
 
   propagatedBuildInputs = [

diff --git a/pkgs/development/python-modules/aioamqp/default.nix b/pkgs/development/python-modules/aioamqp/default.nix
@@ -3,7 +3,7 @@
 
 buildPythonPackage rec {
   pname = "aioamqp";
-  version = "0.13.0";
+  version = "0.14.0";
 
   meta = {
     homepage = https://github.com/polyconseil/aioamqp;
@@ -13,7 +13,7 @@ buildPythonPackage rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ced0d2bb0054809b37b0636da34fc7cda23d66943fb5f9f0610555988cf347b2";
+    sha256 = "eef5c23a7fedee079d8326406f5c7a5725dfe36c359373da3499fffa16f79915";
   };
 
   disabled = pythonOlder "3.3";

diff --git a/pkgs/development/python-modules/aioesphomeapi/default.nix b/pkgs/development/python-modules/aioesphomeapi/default.nix
@@ -2,13 +2,13 @@
 
 buildPythonPackage rec {
   pname = "aioesphomeapi";
-  version = "2.4.2";
+  version = "2.6.1";
 
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e43e0fd628506f95752e90ab1579e5495183cc3c46915d0b0a062975cb5d181b";
+    sha256 = "139d1d348fcfe2f34926a210a32dff069935d17167c4e1cb66e8b039cbb4d6c1";
   };
 
   propagatedBuildInputs = [ attrs protobuf zeroconf ];

diff --git a/pkgs/development/python-modules/aiohttp/default.nix b/pkgs/development/python-modules/aiohttp/default.nix
@@ -51,6 +51,7 @@ buildPythonPackage rec {
                and not connector \
                and not client_disconnect \
                and not handle_keepalive_on_closed_connection \
+               and not proxy_https_bad_response \
                and not partially_applied_handler \
                and not middleware" \
       --ignore=test_connector.py

diff --git a/pkgs/development/python-modules/aiohue/default.nix b/pkgs/development/python-modules/aiohue/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "aiohue";
-  version = "1.9.2";
+  version = "1.10.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "a7e545ae17658c10f2c5321e40b85426a8c284e5b33b5dfbe9171f9bdf37aa3e";
+    sha256 = "d95e51f15c442d769004774e7b4220155e32dc6c8ae834b035a2f0d8ff783ff0";
   };
 
   propagatedBuildInputs = [ aiohttp ];

diff --git a/pkgs/development/python-modules/alembic/default.nix b/pkgs/development/python-modules/alembic/default.nix
@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "alembic";
-  version = "1.2.1";
+  version = "1.3.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "9f907d7e8b286a1cfb22db9084f9ce4fde7ad7956bb496dc7c952e10ac90e36a";
+    sha256 = "3b0cb1948833e062f4048992fbc97ecfaaaac24aaa0d83a1202a99fb58af8c6d";
   };
 
   buildInputs = [ pytest pytestcov mock coverage ];

diff --git a/pkgs/development/python-modules/altair/default.nix b/pkgs/development/python-modules/altair/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, buildPythonPackage, fetchPypi
+{ stdenv, buildPythonPackage, fetchPypi, isPy27
 , entrypoints
 , glibcLocales
 , ipython
@@ -18,11 +18,12 @@
 
 buildPythonPackage rec {
   pname = "altair";
-  version = "3.2.0";
+  version = "4.0.0";
+  disabled = isPy27;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "098macm0sw54xqijdy1c8cppcgw79wn52qdc71qqb51nibc17gls";
+    sha256 = "92dcd7b84c715f8e02bbdf37e36193a4af8138b5b064c05f237e6ed41573880a";
   };
 
   propagatedBuildInputs = [

diff --git a/pkgs/development/python-modules/annoy/default.nix b/pkgs/development/python-modules/annoy/default.nix
@@ -5,12 +5,12 @@
 }:
 
 buildPythonPackage rec {
-  version = "1.16.2";
+  version = "1.16.3";
   pname = "annoy";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "41348e813fe7125eda3e2229a075eba3d065173ba6c5f20c545bb9c2932633fa";
+    sha256 = "fe2779664bd8846f2d67191a7e6010b8df890ac4586336748fd0697f31654379";
   };
 
   checkInputs = [

diff --git a/pkgs/development/python-modules/ansible-lint/default.nix b/pkgs/development/python-modules/ansible-lint/default.nix
@@ -11,11 +11,11 @@
 
 buildPythonPackage rec {
   pname = "ansible-lint";
-  version = "4.1.1a0";
+  version = "4.2.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "00mw56a3lmdb5xvrzhahrzqv3wvxfz0mxl4n0qbkxzggf2pg0i8d";
+    sha256 = "eb925d8682d70563ccb80e2aca7b3edf84fb0b768cea3edc6846aac7abdc414a";
   };
 
   nativeBuildInputs = [ setuptools_scm ];
@@ -42,5 +42,6 @@ buildPythonPackage rec {
     description = "Best practices checker for Ansible";
     license = licenses.mit;
     maintainers = [ maintainers.sengaya ];
+    broken = true; # requires new flit to build
   };
 }
diff --git a/pkgs/development/python-modules/apispec/default.nix b/pkgs/development/python-modules/apispec/default.nix
@@ -11,11 +11,11 @@
 
 buildPythonPackage rec {
   pname = "apispec";
-  version = "3.1.0";
+  version = "3.1.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0rr32z9hbf8w4w1fs5gj2v0ixcq2vq7a3wssrlxagi5ii7ygap7y";
+    sha256 = "24b8490c22310b0779a058ccb24ec2fef33d571bb5aba1f525ab5963b0eabcdd";
   };
 
   checkInputs = [

diff --git a/pkgs/development/python-modules/argon2_cffi/default.nix b/pkgs/development/python-modules/argon2_cffi/default.nix
@@ -12,11 +12,12 @@
 
 buildPythonPackage rec {
   pname = "argon2_cffi";
-  version = "19.1.0";
+  version = "19.2.0";
 
   src = fetchPypi {
-    inherit pname version;
-    sha256 = "81548a27b919861040cb928a350733f4f9455dd67c7d1ba92eb5960a1d7f8b26";
+    pname = "argon2-cffi";
+    inherit version;
+    sha256 = "ffaa623eea77b497ffbdd1a51e941b33d3bf552c60f14dbee274c4070677bda3";
   };
 
   propagatedBuildInputs = [ cffi six ] ++ lib.optional (!isPy3k) enum34;

diff --git a/pkgs/development/python-modules/ase/3.17.nix b/pkgs/development/python-modules/ase/3.17.nix
@@ -11,11 +11,11 @@
 
 buildPythonPackage rec {
   pname = "ase";
-  version = "3.18.1";
+  version = "3.17.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "e21948dbf79011cc796d772885a8aafb255a6f365d112fe6a3bd26198c6cac7f";
+    sha256 = "1d4gxypaahby45zcpl0rffcn2z7n55dg9lcd8sv6jjsmbbf9vr4g";
   };
 
   propagatedBuildInputs = [ numpy scipy matplotlib flask pillow psycopg2 ];

diff --git a/pkgs/development/python-modules/ase/default.nix b/pkgs/development/python-modules/ase/default.nix
@@ -12,12 +12,12 @@
 
 buildPythonPackage rec {
   pname = "ase";
-  version = "3.18.1";
+  version = "3.19.0";
   disabled = isPy27;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0zxcdj61j9mxlgk2y4ax6rpml9gvmal8aa3pdmwwq4chyzdlh6g2";
+    sha256 = "a8378ab57e91cfe1ba09b3639d8409bb7fc1a40b59479c7822d206e673ad93f9";
   };
 
   propagatedBuildInputs = [ numpy scipy matplotlib flask pillow psycopg2 ];

diff --git a/pkgs/development/python-modules/astropy-helpers/default.nix b/pkgs/development/python-modules/astropy-helpers/default.nix
@@ -6,15 +6,15 @@
 
 buildPythonPackage rec {
   pname = "astropy-helpers";
-  version = "3.2.2";
+  version = "4.0.1";
 
   disabled = !isPy3k;
 
   doCheck = false; # tests requires sphinx-astropy
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "cf32cb008b19597a1fe1a4d97f59734f30cd513aa3369a321e7b5b86cdb623fb";
+    sha256 = "f1096414d108778218d6bea06d4d9c7b2ff7c83856a451331ac194e74de9f413";
   };
 
   meta = with lib; {

diff --git a/pkgs/development/python-modules/astropy/default.nix b/pkgs/development/python-modules/astropy/default.nix
@@ -10,13 +10,13 @@
 
 buildPythonPackage rec {
   pname = "astropy";
-  version = "3.2.3";
+  version = "4.0";
 
   disabled = !isPy3k; # according to setup.py
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "47f00816c2978fdd10f448c8f0337d6dca7b8cbeaab4bf272b5fd37cb4b890d3";
+    sha256 = "404200e0baa84de09ac563ad9ccab3817e9b9669d0025cee74a8752f4bc2771b";
   };
 
   nativeBuildInputs = [ astropy-helpers ];

diff --git a/pkgs/development/python-modules/astunparse/default.nix b/pkgs/development/python-modules/astunparse/default.nix
@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "astunparse";
-  version =  "1.6.2";
+  version =  "1.6.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "dab3e426715373fd76cd08bb1abe64b550f5aa494cf1e32384f26fd60961eb67";
+    sha256 = "5ad93a8456f0d084c3456d059fd9a92cce667963232cbf763eac3bc5b7940872";
   };
 
   propagatedBuildInputs = [ six wheel ];

diff --git a/pkgs/development/python-modules/asyncssh/default.nix b/pkgs/development/python-modules/asyncssh/default.nix
@@ -5,12 +5,12 @@
 
 buildPythonPackage rec {
   pname = "asyncssh";
-  version = "1.18.0";
+  version = "2.1.0";
   disabled = pythonOlder "3.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1d9x7xpsqqd5scdk7f1c76lycgrxylaaf5qn4p46i8clfvm5a435";
+    sha256 = "19d0b4c65115d09b42ed21c748884157babfb3055a6e130ea349dfdcbcef3380";
   };
 
   patches = [

diff --git a/pkgs/development/python-modules/audio-metadata/default.nix b/pkgs/development/python-modules/audio-metadata/default.nix
@@ -19,7 +19,7 @@ buildPythonPackage rec {
   postPatch = ''
     substituteInPlace setup.py \
       --replace "bidict>=0.17,<0.18" "bidict" \
-      --replace "more-itertools>=4.0,<5.0" "more-itertools"
+      --replace "more-itertools>=4.0,<8.0" "more-itertools"
   '';
 
   propagatedBuildInputs = [

diff --git a/pkgs/development/python-modules/autobahn/default.nix b/pkgs/development/python-modules/autobahn/default.nix
@@ -4,11 +4,11 @@
 }:
 buildPythonPackage rec {
   pname = "autobahn";
-  version = "19.10.1";
+  version = "19.11.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "734385b00547448b3f30a752cbfd2900d15924d77dc4a1699b8bce1ea8899f39";
+    sha256 = "201b9879b49c6e259d4126dbafe9e3c73807de0c242d50065fbebc62c6ccb181";
   };
 
   propagatedBuildInputs = [ six txaio twisted zope_interface cffi cryptography pynacl ] ++

diff --git a/pkgs/development/python-modules/awkward/default.nix b/pkgs/development/python-modules/awkward/default.nix
@@ -11,11 +11,11 @@
 
 buildPythonPackage rec {
   pname = "awkward";
-  version = "0.12.17";
+  version = "0.12.18";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "f794c926e726b3545035ffcb8e6defe6a4ea975c6266c0154024e4591739a253";
+    sha256 = "9b3df4f2be92ac7d16709f15769c97591f25f0442061f1a4cc8715feb268e45c";
   };
 
   nativeBuildInputs = [ pytestrunner ];