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moold committed May 8, 2019
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[![Downloads](https://img.shields.io/github/downloads/Nextomics/NextPolish/total.svg)](https://github.com/Nextomics/NextPolish/releases/download/V1.0.1/NextPolish.v1.0.1.tgz)
[![Downloads](https://img.shields.io/github/downloads/Nextomics/NextPolish/total.svg)](https://github.com/Nextomics/NextPolish/releases/download/V1.0.0/NextPolish.tgz)
[![Release](https://img.shields.io/github/release/Nextomics/NextPolish.svg)](https://github.com/Nextomics/NextPolish/releases)
[![Last-commit](https://img.shields.io/github/last-commit/Nextomics/NextPolish.svg)](https://github.com/Nextomics/NextPolish/commits/master)
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# NextPolish
NextPolish is used to fix base errors (SNP/Indel) in the genome generated by noisy long reads, it can be used with short read data only or long read data only or a combination of both. To correct the raw TGS long reads with approximately 15-10% sequencing errors, please use [NextDenovo](https://github.com/Nextomics/NextDenovo).

* **NextPolish** contains two core modules and four steps (steps 3 & 4 are optional), and use a stepwise fashion to correct the error bases in reference genome.
NextPolish is used to fix base errors (SNP/Indel) in the genome generated by noisy long reads, it can be used with short read data only or long read data only or a combination of both. It contains two core modules and four steps (steps 3 & 4 are optional), and use a stepwise fashion to correct the error bases in reference genome. To correct the raw TGS long reads with approximately 15-10% sequencing errors, please use [NextDenovo](https://github.com/Nextomics/NextDenovo).

* **DOWNLOAD**
click [here](https://github.com/Nextomics/NextPolish/releases/download/V1.0.1/NextPolish.v1.0.1.tgz)
`wget https://github.com/Nextomics/NextPolish/releases/download/V1.0.1/NextPolish.v1.0.1.tgz`
click [here](https://github.com/Nextomics/NextPolish/releases/download/V1.0.0/NextPolish.tgz) or use the following command:
`wget https://github.com/Nextomics/NextPolish/releases/download/V1.0.0/NextPolish.tgz`

* **REQUIREMENT**
* [Python 2.7](https://www.python.org/download/releases/2.7/)
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For additional help, please send an email to huj_at_grandomics_dot_com.

* **COPYRIGHT**
NextPolish is freely available for academic use and other non-commercial use. For commercial use, please contact [NextOmics](https://www.nextomics.cn/en/).
NextPolish is freely available for academic use and other non-commercial use.

* **PLEASE STAR AND THANKS**

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