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update download link
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moold committed Jul 30, 2019
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[![Downloads](https://img.shields.io/github/downloads/Nextomics/NextPolish/total.svg)](https://github.com/Nextomics/NextPolish/releases/download/v1.0.3/NextPolish.tgz)
[![Downloads](https://img.shields.io/github/downloads/Nextomics/NextPolish/total.svg)](https://github.com/Nextomics/NextPolish/releases/download/v1.0.4/NextPolish.tgz)
[![Release](https://img.shields.io/github/release/Nextomics/NextPolish.svg)](https://github.com/Nextomics/NextPolish/releases)
[![Issues](https://img.shields.io/github/issues/Nextomics/NextPolish.svg)](https://github.com/Nextomics/NextPolish/issues)

# NextPolish
NextPolish is used to fix base errors (SNV/Indel) in the genome generated by noisy long reads, it can be used with short read data only or long read data only or a combination of both. It contains two core modules, and use a stepwise fashion to correct the error bases in reference genome. To correct the raw third-generation sequencing (TGS) long reads with approximately 15-10% sequencing errors, please use [NextDenovo](https://github.com/Nextomics/NextDenovo).

* **DOWNLOAD**
click [here](https://github.com/Nextomics/NextPolish/releases/download/v1.0.3/NextPolish.tgz) or use the following command:
`wget https://github.com/Nextomics/NextPolish/releases/download/v1.0.3/NextPolish.tgz`
click [here](https://github.com/Nextomics/NextPolish/releases/download/v1.0.4/NextPolish.tgz) or use the following command:
`wget https://github.com/Nextomics/NextPolish/releases/download/v1.0.4/NextPolish.tgz`

* **REQUIREMENT**
* [Python 2.7](https://www.python.org/download/releases/2.7/)
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* [Drmaa](https://github.com/pygridtools/drmaa-python) (Only required by running under non-local system)

* **INSTALL**
`cd NextPolish && make`
`tar -vxzf NextPolish.tgz && cd NextPolish && make`

* **UNINSTALL**
`cd NextPolish && make clean`

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