================= Welcome to CHANCE-HT! (Parallel CHANCE)

The core algorithm of CHANCE has been re-implemented in deepTools (bamFingerprint). The underlying normalization framework has been implemented in the differential peak caller THOR. We recommend these tools.

Name		Name	Last commit message	Last commit date
Latest commit History 15 Commits
Manual.pdf		Manual.pdf
Manual.txt		Manual.txt
Manual.txt~		Manual.txt~
README.md		README.md
bin_ent_stat.m		bin_ent_stat.m
bin_rel_entropy.m		bin_rel_entropy.m
chance.m		chance.m
chance.png		chance.png
comp_scaling_factor.m		comp_scaling_factor.m
cons_fun.m		cons_fun.m
custombam.jar		custombam.jar
dist_fun.m		dist_fun.m
extract_sig.m		extract_sig.m
fdr_data.mat		fdr_data.mat
find_tf_binding_odds.m		find_tf_binding_odds.m
fuse.m		fuse.m
hartigansdipsigniftest.m		hartigansdipsigniftest.m
hartigansdiptest.m		hartigansdiptest.m
hg18lengths.mat		hg18lengths.mat
hg19lengths.mat		hg19lengths.mat
make_density_from_file.m		make_density_from_file.m
mm9lengths.mat		mm9lengths.mat
sam-1.64.jar		sam-1.64.jar
samp_dist.m		samp_dist.m
sum_density_over_bed.m		sum_density_over_bed.m
sum_on_intervs.m		sum_on_intervs.m