* change tutorial to use correct h5py.File object

* rmv addition of RemFile as an allowed type for NWBHDF5IO
NeurodataWithoutBorders · Nov 27, 2023 · 31c5f5f · 31c5f5f
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commit 31c5f5f
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diff --git a/docs/gallery/advanced_io/streaming.py b/docs/gallery/advanced_io/streaming.py
@@ -139,10 +139,10 @@
 from pynwb import NWBHDF5IO
 import remfile
 
-file = remfile.File(s3_url)
+rem_file = remfile.File(s3_url)
 
-with h5py.File(file, "r") as f:
-    with NWBHDF5IO(file=file, load_namespaces=True) as io:
+with h5py.File(rem_file, "r") as h5py_file:
+    with NWBHDF5IO(file=h5py_file, load_namespaces=True) as io:
         nwbfile = io.read()
         print(nwbfile.acquisition["lick_times"].time_series["lick_left_times"].data[:])
 

diff --git a/src/pynwb/__init__.py b/src/pynwb/__init__.py
@@ -250,7 +250,7 @@ def can_read(path: str):
             {'name': 'extensions', 'type': (str, TypeMap, list),
              'doc': 'a path to a namespace, a TypeMap, or a list consisting paths to namespaces and TypeMaps',
              'default': None},
-            {'name': 'file', 'type': [h5py.File, 'S3File', "RemFile"], 'doc': 'a pre-existing h5py.File object',
+            {'name': 'file', 'type': [h5py.File, 'S3File'], 'doc': 'a pre-existing h5py.File object',
              'default': None},
             {'name': 'comm', 'type': "Intracomm", 'doc': 'the MPI communicator to use for parallel I/O',
              'default': None},