temporarily comment DLC dataset

NeurodataWithoutBorders · Dec 9, 2024 · 535135e · 535135e
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diff --git a/.github/workflows/testing_pipelines.yml b/.github/workflows/testing_pipelines.yml
@@ -74,24 +74,29 @@ jobs:
       - name: Get ephy_testing_data current head hash
         id: ephys
         run: echo "::set-output name=HASH_EPHY_DATASET::$(git ls-remote https://gin.g-node.org/NeuralEnsemble/ephy_testing_data.git HEAD | cut -f1)"
+
       - name: Cache ephys dataset - ${{ steps.ephys.outputs.HASH_EPHY_DATASET }}
         uses: actions/cache@v4
         id: cache-ephys-datasets
         with:
           path: ./ephy_testing_data
           key: ephys-datasets-${{ matrix.os }}-${{ steps.ephys.outputs.HASH_EPHY_DATASET }}
+
       - name: Get ophys_testing_data current head hash
         id: ophys
         run: echo "::set-output name=HASH_OPHYS_DATASET::$(git ls-remote https://gin.g-node.org/CatalystNeuro/ophys_testing_data.git HEAD | cut -f1)"
+
       - name: Cache ophys dataset - ${{ steps.ophys.outputs.HASH_OPHYS_DATASET }}
         uses: actions/cache@v4
         id: cache-ophys-datasets
         with:
           path: ./ophys_testing_data
           key: ophys-datasets-${{ matrix.os }}-${{ steps.ophys.outputs.HASH_OPHYS_DATASET }}
+
       - name: Get behavior_testing_data current head hash
         id: behavior
         run: echo "::set-output name=HASH_BEHAVIOR_DATASET::$(git ls-remote https://gin.g-node.org/CatalystNeuro/behavior_testing_data.git HEAD | cut -f1)"
+
       - name: Cache behavior dataset - ${{ steps.behavior.outputs.HASH_BEHAVIOR_DATASET }}
         uses: actions/cache@v4
         id: cache-behavior-datasets

diff --git a/src/example_pipelines.yml b/src/example_pipelines.yml
@@ -26,80 +26,66 @@ SpikeGLX-Phy:
     PhySortingInterface:
       folder_path: ephy_testing_data/phy/phy_example_0
 
-
 SpikeGLX_v1_SingleProbe_AP:
   SpikeGLXRecordingInterface:
     file_path: ephy_testing_data/spikeglx/Noise4Sam_g0/Noise4Sam_g0_imec0/Noise4Sam_g0_t0.imec0.ap.bin
 
-
 SpikeGLXConverter-Phy:
   SpikeGLXConverterPipe:
     folder_path: ephy_testing_data/spikeglx/Noise4Sam_g0
   PhySortingInterface:
     folder_path: ephy_testing_data/phy/phy_example_0
 
-
 Suite2P_SinglePlane_SingleChannel:
   metadata:
     NWBFile:
       session_start_time: 2024-05-09T00:00
     Ophys:
       ImagingPlane:
-        -
-          excitation_lambda: NaN
+        - excitation_lambda: NaN
           optical_channel:
-            -
-              emission_lambda: NaN
+            - emission_lambda: NaN
 
   interfaces:
     Suite2pSegmentationInterface:
       folder_path: ophys_testing_data/segmentation_datasets/suite2p
 
-
 Caiman_SinglePlane_SingleChannel:
   metadata:
     NWBFile:
       session_start_time: 2024-05-09T00:00
     Ophys:
       ImagingPlane:
-        -
-          excitation_lambda: NaN
+        - excitation_lambda: NaN
           optical_channel:
-            -
-              emission_lambda: NaN
+            - emission_lambda: NaN
 
   interfaces:
     CaimanSegmentationInterface:
       file_path: ophys_testing_data/segmentation_datasets/caiman/caiman_analysis.hdf5
 
-
 ScanImage_SinglePlane_SingleChannel:
-
   metadata:
     Ophys:
       ImagingPlane:
-        -
-          excitation_lambda: NaN
+        - excitation_lambda: NaN
           optical_channel:
-            -
-              emission_lambda: NaN
+            - emission_lambda: NaN
 
   interfaces:
     ScanImageImagingInterface:
       file_path: ophys_testing_data/imaging_datasets/ScanImage/sample_scanimage_version_3_8.tiff
 
-
 TDT:
   metadata:
-      NWBFile:
-        session_start_time: 2024-05-09T00:00
+    NWBFile:
+      session_start_time: 2024-05-09T00:00
 
   interfaces:
     TdtRecordingInterface:
       folder_path: ephy_testing_data/tdt/aep_05
       gain: 1
 
-
 CellExplorer:
   metadata:
     NWBFile:
@@ -109,7 +95,6 @@ CellExplorer:
     CellExplorerRecordingInterface:
       folder_path: ephy_testing_data/cellexplorer/dataset_4/Peter_MS22_180629_110319_concat_stubbed
 
-
 CellExplorerUnits:
   metadata:
     NWBFile:
@@ -121,7 +106,6 @@ CellExplorerUnits:
     CellExplorerSortingInterface:
       file_path: ephy_testing_data/cellexplorer/dataset_4/Peter_MS22_180629_110319_concat_stubbed/Peter_MS22_180629_110319_concat_stubbed.spikes.cellinfo.mat
 
-
 CellExplorerSortingOnly:
   metadata:
     NWBFile:
@@ -131,24 +115,19 @@ CellExplorerSortingOnly:
     CellExplorerSortingInterface:
       file_path: ephy_testing_data/cellexplorer/dataset_4/Peter_MS22_180629_110319_concat_stubbed/Peter_MS22_180629_110319_concat_stubbed.spikes.cellinfo.mat
 
-
 IntanSingleFileRecording:
   metadata:
     NWBFile:
       session_start_time: 2024-05-09T00:00
     Ecephys:
       ElectrodeGroup:
-        -
-          location: Test location
-        -
-          location: Test location
-        -
-          location: Test location
+        - location: Test location
+        - location: Test location
+        - location: Test location
   interfaces:
     IntanRecordingInterface:
       file_path: ephy_testing_data/intan/intan_rhd_test_1.rhd
 
-
 MEArec:
   metadata:
     NWBFile:
@@ -158,32 +137,27 @@ MEArec:
     MEArecRecordingInterface:
       file_path: ephy_testing_data/mearec/mearec_test_10s.h5
 
-
 BrukerTiffMultiChannelSinglePlane:
   metadata:
     Ophys:
       ImagingPlane:
-        -
-          excitation_lambda: NaN
+        - excitation_lambda: NaN
           optical_channel:
-            -
-              emission_lambda: NaN
+            - emission_lambda: NaN
 
   interfaces:
     BrukerTiffSinglePlaneConverter:
       folder_path: ophys_testing_data/imaging_datasets/BrukerTif/NCCR32_2023_02_20_Into_the_void_t_series_baseline-000
 
+# DeepLabCut:
+#   metadata:
+#     NWBFile:
+#       session_start_time: 2024-05-09T00:00
 
-DeepLabCut:
-  metadata:
-    NWBFile:
-      session_start_time: 2024-05-09T00:00
-
-  interfaces:
-    DeepLabCutInterface:
-      file_path: behavior_testing_data/DLC/m3v1mp4DLC_resnet50_openfieldAug20shuffle1_30000.h5
-      config_file_path: behavior_testing_data/DLC/config.yaml
-
+#   interfaces:
+#     DeepLabCutInterface:
+#       file_path: behavior_testing_data/DLC/m3v1mp4DLC_resnet50_openfieldAug20shuffle1_30000.h5
+#       config_file_path: behavior_testing_data/DLC/config.yaml
 
 SLEAP:
   metadata: