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Hotfix: GitHub actions runners docs and test-conda, with scipy==1.8.1 #490

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merged 14 commits into from
Jun 30, 2022
Merged

Hotfix: GitHub actions runners docs and test-conda, with scipy==1.8.1 #490

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a7b441a
introduced upper bound version for scipy<1.8.1
Jun 1, 2022
ff386b6
Fix fix conda runners (#94)
Moritz-Alexander-Kern Jun 3, 2022
4ad93b1
add synchronize
Jun 3, 2022
2ea9117
Merge remote-tracking branch 'origin/fix/fix_conda_runners_scipy' int…
Jun 3, 2022
0e646f9
CodeFactor
Jun 3, 2022
67184b3
re-add version cap for jinja2, this is a separate PR #492
Jun 3, 2022
e62f7ad
install libstdcxx-ng
Jun 10, 2022
de940e3
update libstdc++
Jun 10, 2022
31bc144
use conda update all
Jun 10, 2022
d3fca68
install libstdcxx-ng from conda-forge
Jun 10, 2022
5293c59
rollback
Jun 10, 2022
f207012
use libstdcxx-ng 12.1.0 from conda-forge, remove scipy version cap
Jun 10, 2022
df48e97
add conda-forge channel to get latest versions
Jun 10, 2022
cd26dfe
readd class.rst
Jun 10, 2022
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42 changes: 23 additions & 19 deletions .github/workflows/CI.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@ on:
#- edited
#- closed
#- reopened
#- synchronize
- synchronize
#- converted_to_draft
#- ready_for_review
#- locked
Expand Down Expand Up @@ -61,21 +61,22 @@ jobs:
- name: Get current year-month
id: date
run: echo "::set-output name=date::$(date +'%Y-%m')"
- uses: actions/checkout@v2
- uses: actions/checkout@v3

- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}

- name: Cache test_env
uses: actions/cache@v2
uses: actions/cache@v3
with:
path: ~/test_env
# Look to see if there is a cache hit for the corresponding requirements files
# cache will be reset on changes to any requirements or every month
key: ${{ runner.os }}-venv-${{ hashFiles('**/requirements.txt') }}-${{ hashFiles('**/requirements-tests.txt') }}
-${{ hashFiles('**/requirements-extras.txt') }}-${{ hashFiles('setup.py') }} -${{ steps.date.outputs.date }}
-${{ hashFiles('**/requirements-extras.txt') }}-${{ hashFiles('**/CI.yml') }}-${{ hashFiles('setup.py') }}
-${{ steps.date.outputs.date }}

- name: Install dependencies
run: |
Expand Down Expand Up @@ -121,13 +122,13 @@ jobs:
id: date
run: echo "::set-output name=date::$(date +'%Y-%m')"

- uses: actions/checkout@v2
- uses: actions/checkout@v3

- name: Cache conda
uses: actions/cache@v2
uses: actions/cache@v3
with:
path: ~/conda_pkgs_dir
key: ${{ runner.os }}-conda-${{hashFiles('requirements/environment.yml') }}-${{ steps.date.outputs.date }}
key: ${{ runner.os }}-conda-${{hashFiles('requirements/environment.yml') }}-${{ hashFiles('**/CI.yml') }}-${{ steps.date.outputs.date }}

- uses: conda-incubator/setup-miniconda@v2
with:
Expand Down Expand Up @@ -183,19 +184,19 @@ jobs:
id: date
run: echo "::set-output name=date::$(date +'%Y-%m')"

- uses: actions/checkout@v2
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}

- name: Cache pip
uses: actions/cache@v2
uses: actions/cache@v3
with:
path: ${{ matrix.path }}
# Look to see if there is a cache hit for the corresponding requirements files
key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }}-${{ hashFiles('**/requirements-tests.txt') }}
-${{ hashFiles('**/requirements-extras.txt') }}-${{ hashFiles('setup.py') }} -${{ steps.date.outputs.date }}
-${{ hashFiles('**/requirements-extras.txt') }}-${{ hashFiles('setup.py') }} -${{ hashFiles('**/CI.yml') }}-${{ steps.date.outputs.date }}

- name: Install dependencies
run: |
Expand Down Expand Up @@ -233,21 +234,21 @@ jobs:
- name: Get current year-month
id: date
run: echo "::set-output name=date::$(date +'%Y-%m')"
- uses: actions/checkout@v2
- uses: actions/checkout@v3

- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}

- name: Cache test_env
uses: actions/cache@v2
uses: actions/cache@v3
with:
path: ~/.cache/pip
# Look to see if there is a cache hit for the corresponding requirements files
# cache will be reset on changes to any requirements or every month
key: ${{ runner.os }}-venv-${{ hashFiles('**/requirements.txt') }}-${{ hashFiles('**/requirements-tests.txt') }}
-${{ hashFiles('**/requirements-extras.txt') }}-${{ hashFiles('setup.py') }} -${{ steps.date.outputs.date }}
-${{ hashFiles('**/requirements-extras.txt') }}-${{ hashFiles('setup.py') }} -${{ hashFiles('**/CI.yml') }}-${{ steps.date.outputs.date }}

- name: Setup enviroment
run: |
Expand Down Expand Up @@ -282,20 +283,21 @@ jobs:
fail-fast: false

steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3

- name: Cache pip
uses: actions/cache@v2
uses: actions/cache@v3
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-${{hashFiles('requirements/environment-tests.yml') }}-${{ steps.date.outputs.date }}
key: ${{ runner.os }}-pip-${{hashFiles('requirements/environment-tests.yml') }}-${{ hashFiles('**/CI.yml') }}-${{ steps.date.outputs.date }}

- name: Add conda to system path
run: |
# $CONDA is an environment variable pointing to the root of the miniconda directory
echo $CONDA/bin >> $GITHUB_PATH
- name: Install dependencies
run: |
conda config --add channels conda-forge # bugfix with scipy==1.8.1: libstdcxx-ng 12.1.0 required
conda update conda
conda env update --file requirements/environment-tests.yml --name base
activate base
Expand Down Expand Up @@ -330,26 +332,28 @@ jobs:
id: date
run: echo "::set-output name=date::$(date +'%Y-%m')"

- uses: actions/checkout@v2
- uses: actions/checkout@v3

- name: Add conda to system path
run: |
# $CONDA is an environment variable pointing to the root of the miniconda directory
echo $CONDA/bin >> $GITHUB_PATH

- name: Cache pip
uses: actions/cache@v2
uses: actions/cache@v3
with:
path: ~/.cache/pip
# Look to see if there is a cache hit for the corresponding requirements files
key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements-docs.txt') }}-${{ hashFiles('**/requirements-tutorials.txt') }}-${{ hashFiles('**/environment-docs.yml') }}-${{ steps.date.outputs.date }}
key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements-docs.txt') }}-${{ hashFiles('**/requirements-tutorials.txt') }}-${{ hashFiles('**/environment-docs.yml') }}
-${{ hashFiles('**/CI.yml') }}-${{ steps.date.outputs.date }}

- name: Install dependencies
run: |
sudo apt install -y libopenmpi-dev openmpi-bin
python -m pip install --upgrade pip
pip install -r requirements/requirements-docs.txt
pip install -r requirements/requirements-tutorials.txt
conda config --add channels conda-forge # bugfix with scipy==1.8.1: libstdcxx-ng 12.1.0 required
conda update conda
conda env update --file requirements/environment-docs.yml --name base
conda install -c conda-forge openmpi
Expand Down