Merge pull request #52 from glrs/refactor/10x

Add destination filename for report transfer
NationalGenomicsInfrastructure · Feb 13, 2025 · d5d6dae · d5d6dae
2 parents 0bc6d6f + d5079a1
commit d5d6dae
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diff --git a/lib/realms/tenx/run_sample.py b/lib/realms/tenx/run_sample.py
@@ -440,6 +440,7 @@ def post_process(self) -> None:
             report_path=self.file_handler.report_path,
             project_id=self.project_info.get("project_id", ""),
             sample_id=self.id,
+            destination_filename=self.file_handler.dest_report_name,
         ):
             logging.info(f"[{self.id}] Report transferred successfully.")
         else:

diff --git a/lib/realms/tenx/utils/sample_file_handler.py b/lib/realms/tenx/utils/sample_file_handler.py
@@ -49,6 +49,9 @@ def __init__(self, sample: Any) -> None:
 
         self.fastq_files: Dict[str, Any] = {}
 
+        # Define the name the report should have when transferred to ngi-interal
+        self.dest_report_name: str = f"{self.sample_id}_10x_report.html"
+
         # Define critical file paths
         self.init_file_paths()