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Packed sequence bug fixes #10898

Merged
merged 13 commits into from
Oct 18, 2024
Merged

Packed sequence bug fixes #10898

merged 13 commits into from
Oct 18, 2024

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cuichenx
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@cuichenx cuichenx commented Oct 16, 2024

What does this PR do ?

  1. Save packed dataset in different folders according to the model name, so that different packed datasets don't clash with each other
  2. Fix hanging if preparing packed data before a multi-gpu training session
  3. Raise mbs>1 error and provide suggestion to user instead of automatically changing the config

Collection: [Note which collection this PR will affect]

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@github-actions github-actions bot added the NLP label Oct 16, 2024
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@cuichenx cuichenx marked this pull request as ready for review October 16, 2024 21:20
@cuichenx cuichenx changed the title Chcui/packed seq2 Packed sequence bug fixes Oct 16, 2024
Signed-off-by: Chen Cui <[email protected]>
Signed-off-by: Chen Cui <[email protected]>
pablo-garay
pablo-garay previously approved these changes Oct 17, 2024
@cuichenx cuichenx enabled auto-merge (squash) October 17, 2024 19:58
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It looks like github action uses a container with an older version of TE, so the new checkpoint i added couldn't be loaded. I'll revert to the old checkpoints for now

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[🤖]: Hi @cuichenx 👋,

We wanted to let you know that a CICD pipeline for this PR just finished successfully

So it might be time to merge this PR or get some approvals

I'm just a bot so I'll leave it you what to do next.

//cc @pablo-garay @ko3n1g

@cuichenx cuichenx merged commit 76352fb into main Oct 18, 2024
171 of 173 checks passed
@cuichenx cuichenx deleted the chcui/packed_seq2 branch October 18, 2024 16:33
cuichenx added a commit that referenced this pull request Oct 18, 2024
(cherry picked from commit 76352fb)

Signed-off-by: Chen Cui <[email protected]>
nithinraok pushed a commit that referenced this pull request Oct 18, 2024
* save prepared dataset to different folders according to tokenizer name

Signed-off-by: Chen Cui <[email protected]>

* fix hang

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* Apply isort and black reformatting

Signed-off-by: artbataev <[email protected]>

* fix hang

Signed-off-by: Chen Cui <[email protected]>

* raise mbs>1 error and provide suggestion to user instead of automatically changing config

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* add ci for packed seq

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* fix bug

Signed-off-by: Chen Cui <[email protected]>

---------

Signed-off-by: Chen Cui <[email protected]>
Signed-off-by: cuichenx <[email protected]>
Signed-off-by: artbataev <[email protected]>
Co-authored-by: cuichenx <[email protected]>
Co-authored-by: artbataev <[email protected]>
akoumpa pushed a commit that referenced this pull request Oct 22, 2024
…10893)

* Packed Sequence [NeMo 2] (#10445)

* initial commit

Signed-off-by: Chen Cui <[email protected]>

* seq length bug fix

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* support online concat for mbs>1

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* switch to updating packed seq len with a warning message

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* add header

Signed-off-by: Chen Cui <[email protected]>

* add docstrings

Signed-off-by: Chen Cui <[email protected]>

* fix issue with ssm model

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

---------

Signed-off-by: Chen Cui <[email protected]>
Signed-off-by: cuichenx <[email protected]>
Co-authored-by: cuichenx <[email protected]>
(cherry picked from commit 58e4cc9)

* Packed sequence bug fixes (#10898)
(cherry picked from commit 76352fb)

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* fix peft resume (#10887)

Signed-off-by: Chen Cui <[email protected]>

---------

Signed-off-by: Chen Cui <[email protected]>
Signed-off-by: cuichenx <[email protected]>
Co-authored-by: cuichenx <[email protected]>
artbataev added a commit to artbataev/NeMo that referenced this pull request Oct 22, 2024
* save prepared dataset to different folders according to tokenizer name

Signed-off-by: Chen Cui <[email protected]>

* fix hang

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* Apply isort and black reformatting

Signed-off-by: artbataev <[email protected]>

* fix hang

Signed-off-by: Chen Cui <[email protected]>

* raise mbs>1 error and provide suggestion to user instead of automatically changing config

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* add ci for packed seq

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* fix bug

Signed-off-by: Chen Cui <[email protected]>

---------

Signed-off-by: Chen Cui <[email protected]>
Signed-off-by: cuichenx <[email protected]>
Signed-off-by: artbataev <[email protected]>
Co-authored-by: cuichenx <[email protected]>
Co-authored-by: artbataev <[email protected]>
akoumpa pushed a commit that referenced this pull request Oct 24, 2024
* save prepared dataset to different folders according to tokenizer name

Signed-off-by: Chen Cui <[email protected]>

* fix hang

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* Apply isort and black reformatting

Signed-off-by: artbataev <[email protected]>

* fix hang

Signed-off-by: Chen Cui <[email protected]>

* raise mbs>1 error and provide suggestion to user instead of automatically changing config

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* add ci for packed seq

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* fix bug

Signed-off-by: Chen Cui <[email protected]>

---------

Signed-off-by: Chen Cui <[email protected]>
Signed-off-by: cuichenx <[email protected]>
Signed-off-by: artbataev <[email protected]>
Co-authored-by: cuichenx <[email protected]>
Co-authored-by: artbataev <[email protected]>
Signed-off-by: Alexandros Koumparoulis <[email protected]>
yashaswikarnati pushed a commit that referenced this pull request Oct 24, 2024
* save prepared dataset to different folders according to tokenizer name

Signed-off-by: Chen Cui <[email protected]>

* fix hang

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* Apply isort and black reformatting

Signed-off-by: artbataev <[email protected]>

* fix hang

Signed-off-by: Chen Cui <[email protected]>

* raise mbs>1 error and provide suggestion to user instead of automatically changing config

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* add ci for packed seq

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* fix bug

Signed-off-by: Chen Cui <[email protected]>

---------

Signed-off-by: Chen Cui <[email protected]>
Signed-off-by: cuichenx <[email protected]>
Signed-off-by: artbataev <[email protected]>
Co-authored-by: cuichenx <[email protected]>
Co-authored-by: artbataev <[email protected]>
titu1994 pushed a commit that referenced this pull request Oct 28, 2024
* save prepared dataset to different folders according to tokenizer name

Signed-off-by: Chen Cui <[email protected]>

* fix hang

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* Apply isort and black reformatting

Signed-off-by: artbataev <[email protected]>

* fix hang

Signed-off-by: Chen Cui <[email protected]>

* raise mbs>1 error and provide suggestion to user instead of automatically changing config

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* add ci for packed seq

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* fix bug

Signed-off-by: Chen Cui <[email protected]>

---------

Signed-off-by: Chen Cui <[email protected]>
Signed-off-by: cuichenx <[email protected]>
Signed-off-by: artbataev <[email protected]>
Co-authored-by: cuichenx <[email protected]>
Co-authored-by: artbataev <[email protected]>
hainan-xv pushed a commit to hainan-xv/NeMo that referenced this pull request Nov 5, 2024
* save prepared dataset to different folders according to tokenizer name

Signed-off-by: Chen Cui <[email protected]>

* fix hang

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* Apply isort and black reformatting

Signed-off-by: artbataev <[email protected]>

* fix hang

Signed-off-by: Chen Cui <[email protected]>

* raise mbs>1 error and provide suggestion to user instead of automatically changing config

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* add ci for packed seq

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* fix bug

Signed-off-by: Chen Cui <[email protected]>

---------

Signed-off-by: Chen Cui <[email protected]>
Signed-off-by: cuichenx <[email protected]>
Signed-off-by: artbataev <[email protected]>
Co-authored-by: cuichenx <[email protected]>
Co-authored-by: artbataev <[email protected]>
Signed-off-by: Hainan Xu <[email protected]>
HuiyingLi pushed a commit to HuiyingLi/NeMo that referenced this pull request Nov 15, 2024
* save prepared dataset to different folders according to tokenizer name

Signed-off-by: Chen Cui <[email protected]>

* fix hang

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* Apply isort and black reformatting

Signed-off-by: artbataev <[email protected]>

* fix hang

Signed-off-by: Chen Cui <[email protected]>

* raise mbs>1 error and provide suggestion to user instead of automatically changing config

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* add ci for packed seq

Signed-off-by: Chen Cui <[email protected]>

* Apply isort and black reformatting

Signed-off-by: cuichenx <[email protected]>

* fix bug

Signed-off-by: Chen Cui <[email protected]>

---------

Signed-off-by: Chen Cui <[email protected]>
Signed-off-by: cuichenx <[email protected]>
Signed-off-by: artbataev <[email protected]>
Co-authored-by: cuichenx <[email protected]>
Co-authored-by: artbataev <[email protected]>
ericharper added a commit that referenced this pull request Nov 19, 2024
* nemo2-sft notebook initial draft

Signed-off-by: HuiyingLi <[email protected]>

* remove mixtral info

Signed-off-by: HuiyingLi <[email protected]>

* minor fixes

Signed-off-by: HuiyingLi <[email protected]>

* minor fixes

Signed-off-by: HuiyingLi <[email protected]>

* minor fixes

Signed-off-by: HuiyingLi <[email protected]>

* add import_ckpt script and minor changes

Signed-off-by: HuiyingLi <[email protected]>

* Random read for tarr files in lhotse dataloaders (#10536)

* Random read for tarr files in lhotse dataloaders

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* Apply isort and black reformatting

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* Solve failled tests

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* Apply isort and black reformatting

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* Some changs in tests

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* Apply isort and black reformatting

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* removing import

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---------

Signed-off-by: Nune <[email protected]>
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* training code for hybrid-autoregressive inference model (#10841)

* training code for hybrid-autoregressive inference model

Signed-off-by: Hainan Xu <[email protected]>

* Apply isort and black reformatting

Signed-off-by: hainan-xv <[email protected]>

---------

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Co-authored-by: hainan-xv <[email protected]>

* [🤠]: Howdy folks, let's bump `Dockerfile.ci` to 772faca ! (#10871)

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---------

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* remove stacking operation from batched functions (#10524)

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* PR feedback

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* PR feedback

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* Fix

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---------

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---------

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* initial draft

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---------

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---------

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---------

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* fix peft resume (#10887)

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---------

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* Akoumparouli/nemo ux moe loss logging (#10128)

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---------

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---------

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* Fix artifact saving (#10914)

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* Lora improvement (#10918)

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* add wildcard match to lora target modules

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---------

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* Huvu/t5 nemo2.0 peft (#10916)

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---------

Co-authored-by: Huy Vu2 <[email protected]>

* Add tie_word_embeddings=True (#10710)

Signed-off-by: Yoshi Suhara <[email protected]>

* Use a context-manager when opening files (#10895)

* Use a context-manager when opening files

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---------

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* long context performance numbers in doc (#10784)

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* Akoumparouli/mcore microbatch calculator fix (#10780)

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* add microbatch calculator context manager

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* add on_load_checkpoint test to ValidateModelRestoration; use ctx manager to reconfigure microbatch calculator; update save/restore path; add cleanup step at the end

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* remove unused var

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---------

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* remove 8x3b recipes (#10764)

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---------

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* change the figure file name

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* [🤠]: Howdy folks, let's bump `Dockerfile.ci` to 3f90b98 ! (#10789)

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* Add ModelOpt transformer model pruning example for Llama models, default to llama3.1-8b-base (#10294)

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* Apply isort and black reformatting

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* examples code is at wrong dir, move them

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remove some logging and unused config code, update example model to
llama3.1

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---------

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---------

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* Fix for crashes with tensorboard_logger=false and VP + LoRA (#10792)

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* Apply isort and black reformatting

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---------

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* Disable checkpoint conversion inside AutoResume

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---------

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* replace png file to github assets

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---------

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Signed-off-by: Malay Nagda <[email protected]>

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---------

Signed-off-by: Malay Nagda <[email protected]>
Signed-off-by: malay-nagda <[email protected]>
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Signed-off-by: cuichenx <[email protected]>

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Signed-off-by: artbataev <[email protected]>

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---------

Signed-off-by: Chen Cui <[email protected]>
Signed-off-by: cuichenx <[email protected]>
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Signed-off-by: Vladimir Bataev <[email protected]>

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---------

Signed-off-by: BoxiangW <[email protected]>
Co-authored-by: BoxiangW <[email protected]>

* Akoumparouli/nemo ux fix dir or string artifact (#10936)

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Signed-off-by: Alexandros Koumparoulis <[email protected]>

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Signed-off-by: akoumpa <[email protected]>

---------

Signed-off-by: Alexandros Koumparoulis <[email protected]>
Signed-off-by: akoumpa <[email protected]>
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---------

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---------

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---------

Signed-off-by: dimapihtar <[email protected]>
Signed-off-by: Pablo Garay <[email protected]>
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---------

Signed-off-by: adithyare <[email protected]>
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* [🤠]: Howdy folks, let's bump `Dockerfile.ci` to db7d37b ! (#10965)

Signed-off-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: pablo-garay <[email protected]>

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---------

Signed-off-by: Alexandros Koumparoulis <[email protected]>
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---------

Signed-off-by: Jason <[email protected]>
Signed-off-by: blisc <[email protected]>
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---------

Signed-off-by: Alexandros Koumparoulis <[email protected]>
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---------

Signed-off-by: huvunvidia <[email protected]>
Co-authored-by: Huy Vu2 <[email protected]>
Co-authored-by: huvunvidia <[email protected]>

* Alit/mamba recipe (#10935)

* add some mamba recipe

* add 130m

* add the rest of the recipes

* add tokenizer

* add tokenizer

* minor fix

* minor fix

* minor fix

* minor fix

* minor fix

* minor fix

* minor fix

* minor fix

* minor fix

* minor fix

* minor fix

* add fixes to ssm for nemorun recipes

* add hybrid tokenizer

* updating some recipes

* Apply isort and black reformatting

Signed-off-by: JRD971000 <[email protected]>

* remove comments

* update gbs

* fix ckpt resume

* fix ckpt resume

* fix ckpt resume

* update recipes final

* Apply isort and black reformatting

Signed-off-by: JRD971000 <[email protected]>

* remove redundant imports

* ckpt convertor dtype fix

* Apply isort and black reformatting

Signed-off-by: JRD971000 <[email protected]>

---------

Signed-off-by: JRD971000 <[email protected]>
Signed-off-by: Ali Taghibakhshi <[email protected]>
Co-authored-by: JRD971000 <[email protected]>

* Long context performance doc hot fix (#10946)

* long context perf

Signed-off-by: Youngeun Kwon <[email protected]>

* update the long context perf

Signed-off-by: Youngeun Kwon <[email protected]>

* Akoumparouli/mcore microbatch calculator fix (#10780)

* move tests/lightning/{,_}io

Signed-off-by: Alexandros Koumparoulis <[email protected]>

* add microbatch calculator context manager

Signed-off-by: Alexandros Koumparoulis <[email protected]>

* use microbatch calculator context manager

Signed-off-by: Alexandros Koumparoulis <[email protected]>

* add on_load_checkpoint test to ValidateModelRestoration; use ctx manager to reconfigure microbatch calculator; update save/restore path; add cleanup step at the end

Signed-off-by: Alexandros Koumparoulis <[email protected]>

* remove unused var

Signed-off-by: Alexandros Koumparoulis <[email protected]>

* fix

Signed-off-by: Alexandros Koumparoulis <[email protected]>

* Apply isort and black reformatting

Signed-off-by: akoumpa <[email protected]>

---------

Signed-off-by: Alexandros Koumparoulis <[email protected]>
Signed-off-by: akoumpa <[email protected]>
Co-authored-by: akoumpa <[email protected]>
Signed-off-by: Youngeun Kwon <[email protected]>

* remove 8x3b recipes (#10764)

* remove 8x3b recipes

Signed-off-by: Alexandros Koumparoulis <[email protected]>

* remove 8x3b from test_nemo_run

Signed-off-by: Alexandros Koumparoulis <[email protected]>

* rm fr…
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3 participants