Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

GPU poa implementation trims windows when using short reads with coverage greater than 200 #1

Open
rvaser opened this issue Jun 19, 2019 · 0 comments
Open

GPU poa implementation trims windows when using short reads with coverage greater than 200 #1

rvaser opened this issue Jun 19, 2019 · 0 comments
Labels
enhancement New feature or request

Comments

@rvaser
Copy link

rvaser commented Jun 19, 2019

Data provided via email. I have run the following commands:

minimap2 -t 8 -x sr assembly.fasta reads.fastq > overlaps.paf
racon_gpu -t 4 -c 4 reads.fastq overlaps.paf assembly.fasta > polished.fasta

Best regards,
Robert
@tijyojwad tijyojwad transferred this issue from another repository Jul 2, 2019
@tijyojwad tijyojwad transferred this issue from another repository Aug 15, 2019
@tijyojwad tijyojwad added the enhancement New feature or request label Aug 29, 2019
tijyojwad pushed a commit that referenced this issue Sep 4, 2019
@rvaser
Merge pull request #1 from clara-genomics/jdaw/merge-into-upstream
9330150 
[cuda] merge latest ClaraGenomicsAnalsysis related improvements
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
enhancement New feature or request
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@tijyojwad @rvaser