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Releases: NUPulmonary/scanpy-utils

v0.1.1

11 Aug 22:23
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  • Fix get_markers function to add pct.1 and pct.2 columns even if no markers were found.

2021-06-24 v0.1

26 Jun 00:27
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  • get_markers function to extract markers from adata and add pct.1, pct.2 fields
  • write_mtx function to dump adata in cellranger mtx format
  • clean_metadata function to merge and remove duplicates from adata.var after merging

Plotting:

  • feature_plot function to plot hexbin feature plot on UMAP
  • plot_composition function to plot composition of clusters based on other metadata
  • expr_colormap function with custom colormap for expression