remove redundant files and code

NOAA-FIMS · Jul 9, 2024 · af6a23b · af6a23b
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commit af6a23b
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Showing 27 changed files with 1 addition and 281 deletions.
diff --git a/content/SEFSC-scamp.qmd b/content/SEFSC-scamp.qmd
@@ -62,17 +62,12 @@ commercial in pounds and recreational in numbers.\
 
 ## Add your script that sets up and runs the model
 
-```{r}
+```{r, output=FALSE}
 ###############################################
 # South Atlantic scamp grouper example assessment
 # Compare output from FIMS and a simplified version of BAM
 ##############################################
 
-# automatically loads fims Rcpp module
-library(FIMS) # Updated to latest fims on 6/6/24
-library(TMB)
-library(dplyr)
-
 # clear memory
 clear()
 graphics.off()

diff --git a/content/figures/AFSC_PK_age_comp_fits_1.png b/content/figures/AFSC_PK_age_comp_fits_1.png
diff --git a/content/figures/AFSC_PK_age_comp_fits_2.png b/content/figures/AFSC_PK_age_comp_fits_2.png
diff --git a/content/figures/AFSC_PK_index_fits.png b/content/figures/AFSC_PK_index_fits.png
diff --git a/content/figures/AFSC_PK_like_profile_R0.png b/content/figures/AFSC_PK_like_profile_R0.png
diff --git a/content/figures/AFSC_PK_ssb_posterior.png b/content/figures/AFSC_PK_ssb_posterior.png
diff --git a/content/figures/AFSC_PK_ts_comparison.png b/content/figures/AFSC_PK_ts_comparison.png
diff --git a/content/figures/AFSC_PK_ts_comparison_relerror.png b/content/figures/AFSC_PK_ts_comparison_relerror.png
diff --git a/content/figures/NEFSC_YT_compare_FRSSB3.png b/content/figures/NEFSC_YT_compare_FRSSB3.png
diff --git a/content/figures/NEFSC_YT_compare_NAA2.png b/content/figures/NEFSC_YT_compare_NAA2.png
diff --git a/content/figures/NEFSC_YT_compare_catch.png b/content/figures/NEFSC_YT_compare_catch.png
diff --git a/content/figures/NEFSC_YT_compare_index.png b/content/figures/NEFSC_YT_compare_index.png
diff --git a/content/figures/NWFSC-petrale_fit_catch.png b/content/figures/NWFSC-petrale_fit_catch.png
diff --git a/content/figures/NWFSC-petrale_fit_comps_fleet1.png b/content/figures/NWFSC-petrale_fit_comps_fleet1.png
diff --git a/content/figures/NWFSC-petrale_fit_comps_fleet2.png b/content/figures/NWFSC-petrale_fit_comps_fleet2.png
diff --git a/content/figures/NWFSC-petrale_fit_index.png b/content/figures/NWFSC-petrale_fit_index.png
diff --git a/content/figures/NWFSC-petrale_numbers_at_age.png b/content/figures/NWFSC-petrale_numbers_at_age.png
diff --git a/content/figures/NWFSC-petrale_time_series.png b/content/figures/NWFSC-petrale_time_series.png
diff --git a/content/figures/NWFSC-petrale_timeseries_comparison.png b/content/figures/NWFSC-petrale_timeseries_comparison.png
diff --git a/content/figures/SEFSC_scamp_caa_fleet1.png b/content/figures/SEFSC_scamp_caa_fleet1.png
diff --git a/content/figures/SEFSC_scamp_caa_fleet2.png b/content/figures/SEFSC_scamp_caa_fleet2.png
diff --git a/content/figures/SEFSC_scamp_caa_survey.png b/content/figures/SEFSC_scamp_caa_survey.png
diff --git a/content/figures/SEFSC_scamp_selex.png b/content/figures/SEFSC_scamp_selex.png
diff --git a/content/figures/SEFSC_scamp_tseries_F.png b/content/figures/SEFSC_scamp_tseries_F.png
diff --git a/content/figures/SEFSC_scamp_tseries_fits.png b/content/figures/SEFSC_scamp_tseries_fits.png
diff --git a/content/figures/SEFSC_scamp_tseries_popn.png b/content/figures/SEFSC_scamp_tseries_popn.png
diff --git a/content/pc.qmd b/content/pc.qmd