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Update sorc/gdas.cd hash #3219

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RussTreadon-NOAA opened this issue Jan 10, 2025 · 7 comments · Fixed by #3220
Closed
2 tasks done

Update sorc/gdas.cd hash #3219

RussTreadon-NOAA opened this issue Jan 10, 2025 · 7 comments · Fixed by #3220
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feature New feature or request

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@RussTreadon-NOAA
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RussTreadon-NOAA commented Jan 10, 2025

What new functionality do you need?

g-w develop currently points at gdas.cd @ d6097af. This GDASApp hash is from mid-December 2025.

GDASApp develop has been updated multiple times since then. For example,

  • several JEDI hashes have been updated
  • the WCOSS2 build has been updated to spack-stack/1.6.0

Developers want to exercise these new capabilities from g-w.

What are the requirements for the new functionality?

GDASApp should run within g-w on WCOSS2 and select NOAA RHPCS machines (Hera, Hercules, Orion)

Acceptance Criteria

  • GDASApp builds on WCOSS2, Hera, Hercules, and Orion
  • g-w CI successfully runs to completion on WCOSS2, Hera, Hercules, and Orion

Suggest a solution (optional)

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@RussTreadon-NOAA
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Work for this issue will be done in RussTreadon-NOAA:feature/update_gdas

RussTreadon-NOAA added a commit to RussTreadon-NOAA/global-workflow that referenced this issue Jan 10, 2025
RussTreadon-NOAA added a commit to RussTreadon-NOAA/global-workflow that referenced this issue Jan 10, 2025
RussTreadon-NOAA added a commit to RussTreadon-NOAA/global-workflow that referenced this issue Jan 10, 2025
@RussTreadon-NOAA
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Successfully build feature/update_gdas at 4e73a31 on WCOSS2 (Cactus), Hera, Hercules, and Orion. Set up and start g-w CI on each machine from user account.

@RussTreadon-NOAA
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g-w CI

Install feature/update_gdas at 4e73a31 on WCOSS2 (Cactus), Hera, Hercules, and Orion. Run g-w CI with the following results on each machine

WCOSS2 (Cactus)

/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C48_ATM_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202103231200        Done    Jan 10 2025 21:04:16    Jan 10 2025 22:20:24
202103231800        Done    Jan 10 2025 21:04:16    Jan 10 2025 22:30:30
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C48mx500_3DVarAOWCDA_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202103241800        Done    Jan 10 2025 21:04:18    Jan 10 2025 21:25:29
202103250000        Done    Jan 10 2025 21:04:18    Jan 10 2025 22:25:32
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C48mx500_hybAOWCDA_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202103241800        Done    Jan 10 2025 21:04:19    Jan 10 2025 21:25:32
202103250000        Done    Jan 10 2025 21:04:19    Jan 10 2025 22:30:35
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C48_S2SWA_gefs_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202103231200        Done    Jan 10 2025 21:04:24    Jan 10 2025 23:55:37
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C48_S2SW_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202103231200        Done    Jan 10 2025 21:04:26    Jan 10 2025 22:50:32
202103231800        Done    Jan 10 2025 21:04:26    Jan 10 2025 23:00:22
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C96_atm3DVar_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202112201800        Done    Jan 10 2025 21:04:28    Jan 10 2025 21:25:40
202112210000        Done    Jan 10 2025 21:04:28    Jan 10 2025 23:35:33
202112210600        Done    Jan 10 2025 21:04:28    Jan 10 2025 23:20:37
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C96C48_hybatmaerosnowDA_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202112201200        Done    Jan 10 2025 21:04:30    Jan 10 2025 21:30:53
202112201800        Done    Jan 10 2025 21:04:30    Jan 10 2025 23:35:36
202112210000        Done    Jan 10 2025 21:04:30    Jan 10 2025 23:25:34
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C96C48_hybatmDA_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202112201800        Done    Jan 10 2025 21:04:32    Jan 10 2025 21:25:47
202112210000        Done    Jan 10 2025 21:04:32    Jan 10 2025 23:35:39
202112210600        Done    Jan 10 2025 21:04:32    Jan 10 2025 23:20:43
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C96C48_ufs_hybatmDA_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202402231800        Done    Jan 10 2025 21:04:33    Jan 10 2025 21:25:50
202402240000        Done    Jan 10 2025 21:04:33    Jan 11 2025 00:05:39
202402240600        Done    Jan 10 2025 21:04:33    Jan 11 2025 00:00:38
 
/lfs/h2/emc/ptmp/russ.treadon/EXPDIR/C96_S2SWA_gefs_replay_ics_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED     
202011010000        Done    Jan 10 2025 21:04:36    Jan 10 2025 22:21:02

Hera

/scratch1/NCEPDEV/stmp2/Russ.Treadon/EXPDIR/C48_ATM_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202103231200        Done    Jan 10 2025 20:52:10    Jan 10 2025 22:10:17
202103231800        Done    Jan 10 2025 20:52:10    Jan 10 2025 22:20:16

/scratch1/NCEPDEV/stmp2/Russ.Treadon/EXPDIR/C48_S2SW_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202103231200        Done    Jan 10 2025 20:52:13    Jan 11 2025 00:20:40
202103231800        Done    Jan 10 2025 20:52:13    Jan 11 2025 00:30:26

/scratch1/NCEPDEV/stmp2/Russ.Treadon/EXPDIR/C48_S2SWA_gefs_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202103231200        Done    Jan 10 2025 20:52:19    Jan 11 2025 00:50:22

/scratch1/NCEPDEV/stmp2/Russ.Treadon/EXPDIR/C48mx500_3DVarAOWCDA_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202103241800        Done    Jan 10 2025 20:52:24    Jan 10 2025 21:30:29
202103250000        Done    Jan 10 2025 20:52:24    Jan 10 2025 22:45:28

/scratch1/NCEPDEV/stmp2/Russ.Treadon/EXPDIR/C48mx500_hybAOWCDA_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202103241800        Done    Jan 10 2025 20:52:27    Jan 10 2025 21:30:31
202103250000        Done    Jan 10 2025 20:52:27    Jan 10 2025 22:40:30

/scratch1/NCEPDEV/stmp2/Russ.Treadon/EXPDIR/C96C48_hybatmDA_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202112201800        Done    Jan 10 2025 20:52:30    Jan 10 2025 21:35:29
202112210000        Done    Jan 10 2025 20:52:30    Jan 11 2025 00:05:29
202112210600        Done    Jan 10 2025 20:52:30    Jan 10 2025 23:45:32

/scratch1/NCEPDEV/stmp2/Russ.Treadon/EXPDIR/C96C48_hybatmaerosnowDA_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202112201200        Done    Jan 10 2025 20:52:33    Jan 10 2025 21:40:32
202112201800        Done    Jan 10 2025 20:52:33    Jan 11 2025 00:01:37
202112210000        Done    Jan 10 2025 20:52:33    Jan 10 2025 23:50:33

/scratch1/NCEPDEV/stmp2/Russ.Treadon/EXPDIR/C96C48_ufs_hybatmDA_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202402231800        Done    Jan 10 2025 20:52:36    Jan 10 2025 21:40:34
202402240000        Done    Jan 10 2025 20:52:36    Jan 11 2025 00:40:36
202402240600        Done    Jan 10 2025 20:52:36    Jan 11 2025 00:36:18

/scratch1/NCEPDEV/stmp2/Russ.Treadon/EXPDIR/C96_S2SWA_gefs_replay_ics_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202011010000        Done    Jan 10 2025 20:52:40    Jan 10 2025 22:55:33

/scratch1/NCEPDEV/stmp2/Russ.Treadon/EXPDIR/C96_atm3DVar_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202112201800        Done    Jan 10 2025 20:52:43    Jan 10 2025 21:40:38
202112210000        Done    Jan 10 2025 20:52:43    Jan 11 2025 00:15:42
202112210600        Done    Jan 10 2025 20:52:43    Jan 10 2025 23:40:33

Hercules
Batch job throughput is extremely slow on Hercules. Only two g-w CI suites have completed as of 1/11/2025 morning. 120 jobs are PENDING in the batch queue.

/work2/noaa/stmp/rtreadon/HERCULES/EXPDIR/C48_ATM_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202103231200        Done    Jan 10 2025 21:10:03    Jan 11 2025 04:00:04
202103231800        Done    Jan 10 2025 21:10:03    Jan 11 2025 04:20:04

/work2/noaa/stmp/rtreadon/HERCULES/EXPDIR/C48mx500_3DVarAOWCDA_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202103241800        Done    Jan 10 2025 21:10:04    Jan 10 2025 21:45:04
202103250000        Done    Jan 10 2025 21:10:04    Jan 11 2025 09:00:05

Unfortunately, there is one job failure on Hercules

/work2/noaa/stmp/rtreadon/HERCULES/EXPDIR/C48mx500_hybAOWCDA_update_gdas
202103250000     gdas_marineanlletkf                     4218366                DEAD                   1         2         118.0

Orion

/work2/noaa/stmp/rtreadon/ORION/EXPDIR/C48_ATM_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202103231200        Done    Jan 10 2025 21:18:10    Jan 10 2025 22:30:06
202103231800        Done    Jan 10 2025 21:18:10    Jan 10 2025 22:50:05

/work2/noaa/stmp/rtreadon/ORION/EXPDIR/C48mx500_3DVarAOWCDA_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202103241800        Done    Jan 10 2025 21:18:12    Jan 10 2025 21:40:07
202103250000        Done    Jan 10 2025 21:18:12    Jan 10 2025 22:55:06

/work2/noaa/stmp/rtreadon/ORION/EXPDIR/C48mx500_hybAOWCDA_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202103241800        Done    Jan 10 2025 21:18:14    Jan 10 2025 21:40:09
202103250000        Done    Jan 10 2025 21:18:14    Jan 10 2025 23:00:10

/work2/noaa/stmp/rtreadon/ORION/EXPDIR/C48_S2SWA_gefs_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202103231200        Done    Jan 10 2025 21:18:23    Jan 11 2025 01:20:28

/work2/noaa/stmp/rtreadon/ORION/EXPDIR/C48_S2SW_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202103231200        Done    Jan 10 2025 21:18:26    Jan 11 2025 00:55:10
202103231800        Done    Jan 10 2025 21:18:26    Jan 11 2025 01:20:11

/work2/noaa/stmp/rtreadon/ORION/EXPDIR/C96_atm3DVar_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202112201800        Done    Jan 10 2025 21:18:28    Jan 10 2025 21:40:15
202112210000        Done    Jan 10 2025 21:18:28    Jan 11 2025 00:20:13
202112210600        Done    Jan 10 2025 21:18:28    Jan 11 2025 00:05:12

/work2/noaa/stmp/rtreadon/ORION/EXPDIR/C96C48_hybatmaerosnowDA_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202112201200        Done    Jan 10 2025 21:18:30    Jan 10 2025 21:40:17
202112201800        Done    Jan 10 2025 21:18:30    Jan 11 2025 00:05:14
202112210000        Done    Jan 10 2025 21:18:30    Jan 11 2025 00:10:14

/work2/noaa/stmp/rtreadon/ORION/EXPDIR/C96C48_hybatmDA_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202112201800        Done    Jan 10 2025 21:18:32    Jan 10 2025 21:40:19
202112210000        Done    Jan 10 2025 21:18:32    Jan 11 2025 00:15:15
202112210600        Done    Jan 10 2025 21:18:32    Jan 11 2025 00:10:16

/work2/noaa/stmp/rtreadon/ORION/EXPDIR/C96C48_ufs_hybatmDA_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202402231800        Done    Jan 10 2025 21:18:34    Jan 10 2025 21:40:22
202402240000        Done    Jan 10 2025 21:18:34    Jan 11 2025 01:20:19
202402240600        Done    Jan 10 2025 21:18:34    Jan 11 2025 02:05:17

/work2/noaa/stmp/rtreadon/ORION/EXPDIR/C96_S2SWA_gefs_replay_ics_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202011010000        Done    Jan 10 2025 21:18:37    Jan 10 2025 23:00:36

Summary

  1. All jobs in all g-w CI streams successfully ran to completion on WCOSS2 (Cactus), Hera, and Orion.
  2. g-w CI is still running on Hercules. There is one failure - 20210325 00Z gdas_marineanlletkf in C48mx500_hybAOWCDA. This failure appears to be due to a missing job dependency (see comment below)

@RussTreadon-NOAA
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Hercules C48mx500_hybAOWCDA failure

Examination of the log file for the 20210325 00Z gdas_marineanlletkf shows that the job failed due to a missing file

 8:
 8: FATAL from PE     8: fms_io(restore_state_all): unable to find any restart files specified by ../ensdata/ens/ocean.1.nc
 8:
 8: Image              PC                Routine            Line        Source
 8: libsoca.so         000014E819CDC909  mpp_mod_mp_mpp_er          72  mpp_util_mpi.inc
 8: libsoca.so         000014E819BB0E58  fms_io_mod_mp_res        4094  fms_io.F90
 8: libsoca.so         000014E819A1BFD2  Unknown               Unknown  Unknown
 8: libsoca.so         000014E819B19944  Unknown               Unknown  Unknown
 8: libsoca.so         000014E819B1D3DB  Unknown               Unknown  Unknown
 8: gdas.x             00000000007214A3  Unknown               Unknown  Unknown
 8: gdas.x             00000000007212DF  Unknown               Unknown  Unknown
 8: gdas.x             000000000085A2F3  Unknown               Unknown  Unknown
 8: gdas.x             000000000074AD7C  Unknown               Unknown  Unknown
 8: gdas.x             000000000074A727  Unknown               Unknown  Unknown
 8: gdas.x             00000000007438F0  Unknown               Unknown  Unknown
 8: liboops.so         000014E7ECCAF152  _ZN4oops3Run7exec     Unknown  Unknown
 8: gdas.x             00000000004D9762  Unknown               Unknown  Unknown

File ensdata/ens/ocean.1.nc is created by job gdas_marinebmat. The gdas_marinebmat log file contains

gdas_marinebmat.log:2025-01-10 22:39:58,072 - INFO     - file_utils  : Copied /work2/noaa/stmp/rtreadon/HERCULES/COMROOT/C48mx500_hybAOWCDA_update_gdas/enkfgdas.20210324/18/mem001/model/ocean/history/enkfgdas.ocean.t18z.inst.f006.nc to /work/noaa/stmp/rtreadon/HERCULES/RUNDIRS/C48mx500_hybAOWCDA_update_gdas/gdas.2021032500/gdasmarineanalysis.2021032500/ensdata/ens/ocean.1.nc

The gdas_marineanlletkf job ran before the gdas_marinebmat job

hercules-login-3:/work2/noaa/stmp/rtreadon/HERCULES/COMROOT/C48mx500_hybAOWCDA_update_gdas/logs/2021032500$ ls -lt gdas_marinebmat.log gdas_marineanlletkf.log
-rw-r--r-- 1 rtreadon stmp 3358955 Jan 10 22:40 gdas_marinebmat.log
-rw-r--r-- 1 rtreadon stmp  309322 Jan 10 22:14 gdas_marineanlletkf.log

The xml file, C48mx500_hybAOWCDA_update_gdas.xml, has the following dependencies for gdas_marineanlletkf

        <dependency>
                <and>
                        <metataskdep metatask="enkfgdas_fcst" cycle_offset="-06:00:00"/>
                        <taskdep task="gdas_prepoceanobs"/>
                </and>
        </dependency>

gdas_marinebmat is not listed as a job dependency.

@guillaumevernieres and @AndrewEichmann-NOAA : Does gdas_marineanlletkf require that gdas_marinebmat successfully complete before gdas_marineanlletkf can be submitted?

If yes, we can add that this dependency to g-w PR #3220.

@RussTreadon-NOAA
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Interesting observation
Although the Hercules 20210325 00Z gdas_marineanlletkf failed, all the other jobs in the C48mx500_hybAOWCDA suite successfully ran to completion.

@RussTreadon-NOAA
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g-w CI on Hercules

g-w CI completed on Hercules with the following results

/work2/noaa/stmp/rtreadon/HERCULES/EXPDIR/C48_ATM_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202103231200        Done    Jan 10 2025 21:10:03    Jan 11 2025 04:00:04
202103231800        Done    Jan 10 2025 21:10:03    Jan 11 2025 04:20:04

/work2/noaa/stmp/rtreadon/HERCULES/EXPDIR/C48_S2SW_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202103231200        Done    Jan 10 2025 21:10:06    Jan 11 2025 22:55:06
202103231800        Done    Jan 10 2025 21:10:06    Jan 11 2025 23:15:06

/work2/noaa/stmp/rtreadon/HERCULES/EXPDIR/C48_S2SWA_gefs_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202103231200        Done    Jan 10 2025 21:10:20    Jan 12 2025 01:50:14

/work2/noaa/stmp/rtreadon/HERCULES/EXPDIR/C48mx500_3DVarAOWCDA_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202103241800        Done    Jan 10 2025 21:10:04    Jan 10 2025 21:45:04
202103250000        Done    Jan 10 2025 21:10:04    Jan 11 2025 09:00:05

/work2/noaa/stmp/rtreadon/HERCULES/EXPDIR/C48mx500_hybAOWCDA_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202103241800        Done    Jan 10 2025 21:10:05    Jan 10 2025 22:40:06
202103250000      Active    Jan 10 2025 21:10:05             -

/work2/noaa/stmp/rtreadon/HERCULES/EXPDIR/C96C48_hybatmDA_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202112201800        Done    Jan 10 2025 21:10:15    Jan 10 2025 23:35:08
202112210000        Done    Jan 10 2025 21:10:15    Jan 11 2025 15:05:09
202112210600        Done    Jan 10 2025 21:10:15    Jan 11 2025 21:45:10

/work2/noaa/stmp/rtreadon/HERCULES/EXPDIR/C96C48_hybatmaerosnowDA_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202112201200        Done    Jan 10 2025 21:10:09    Jan 10 2025 23:55:08
202112201800        Done    Jan 10 2025 21:10:09    Jan 11 2025 15:00:09
202112210000        Done    Jan 10 2025 21:10:09    Jan 11 2025 22:00:10

/work2/noaa/stmp/rtreadon/HERCULES/EXPDIR/C96C48_ufs_hybatmDA_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202402231800        Done    Jan 10 2025 21:10:16    Jan 10 2025 23:50:12
202402240000        Done    Jan 10 2025 21:10:16    Jan 11 2025 16:55:13
202402240600        Done    Jan 10 2025 21:10:16    Jan 11 2025 18:25:09

/work2/noaa/stmp/rtreadon/HERCULES/EXPDIR/C96_S2SWA_gefs_replay_ics_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202011010000        Done    Jan 10 2025 21:10:21    Jan 11 2025 22:35:19

/work2/noaa/stmp/rtreadon/HERCULES/EXPDIR/C96_atm3DVar_update_gdas
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202112201800        Done    Jan 10 2025 21:10:07    Jan 10 2025 22:45:08
202112210000        Done    Jan 10 2025 21:10:07    Jan 11 2025 14:10:07
202112210600        Done    Jan 10 2025 21:10:07    Jan 11 2025 17:25:08

All jobs in all streams except C48mx500_hybAOWCDA successfully ran to completion.

As explained above, job gdas_marineanlletkf failed in C48mx500_hybAOWCDA due to the job running before required input was available. gdas_marinebmat successfully completed after gdas_marineanlletkf failed.

Rewind and reboot gdas_marineanlletkf. This attempt failed because the expected input from gdas_marinebmat resides in a run directory. Rewind and reboot gdas_marinebmat. Job successfully completed. Rewind and reboot gdas_marineanlletkf. This time the job successfully completed.

hercules-login-3:/work2/noaa/stmp/rtreadon/HERCULES/EXPDIR/C48mx500_hybAOWCDA_update_gdas$ rocotostat -d C48mx500_hybAOWCDA_update_gdas.db -w C48mx500_hybAOWCDA_update_gdas.xml -c all -s
   CYCLE         STATE           ACTIVATED              DEACTIVATED
202103241800        Done    Jan 10 2025 21:10:05    Jan 10 2025 22:40:06
202103250000        Done    Jan 10 2025 21:10:05    Jan 13 2025 00:40:05

@RussTreadon-NOAA
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RussTreadon-NOAA commented Jan 13, 2025

PR #3220 is ready for review.

RussTreadon-NOAA added a commit to RussTreadon-NOAA/global-workflow that referenced this issue Jan 13, 2025
@WalterKolczynski-NOAA WalterKolczynski-NOAA removed the triage Issues that are triage label Jan 13, 2025
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