JCB-based obs+bias staging #1312
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This was referenced Oct 8, 2024
DavidNew-NOAA
requested review from
danholdaway,
CoryMartin-NOAA and
RussTreadon-NOAA
CoryMartin-NOAA
previously approved these changes
Oct 8, 2024
danholdaway
previously approved these changes
Oct 9, 2024
CoryMartin-NOAA
pushed a commit
to NOAA-EMC/jcb-gdas
that referenced
this pull request
Oct 9, 2024
This PR is a companion to Global Workflow PR [#2992](NOAA-EMC/global-workflow#2992) and GDASApp PR [#1312](NOAA-EMC/GDASApp#1312). It add observation and bias files staging templates required for the above Global Workflow PR.
|
@CoryMartin-NOAA @danholdaway @RussTreadon-NOAA Can I get a final review on this, so the companion G-W can move forward? I already have a new G-W PR in preparation that depends on it. Note (FYI @RussTreadon-NOAA): This PR will temporarily break the jjob tests because of changes in how environment variables in the config.* files of G-W are named/defined, but reverting |
|
@DavidNew-NOAA , g-w PR #2978 breaks various job. I'm working on resolving these failures. |
|
Thanks for the update, @RussTreadon-NOAA |
CoryMartin-NOAA
approved these changes
Oct 15, 2024
|
Thanks @RussTreadon-NOAA and @CoryMartin-NOAA for the quick action on this |
RussTreadon-NOAA
added a commit
that referenced
this pull request
Oct 17, 2024
This reverts commit e024564.
WalterKolczynski-NOAA
pushed a commit
to NOAA-EMC/global-workflow
that referenced
this pull request
Nov 19, 2024
…efactoring (#2992) This PR is a companion to GDASApp PR NOAA-EMC/GDASApp#1312 (merged) and NOAA-EMC/jcb-gdas#31 (merged). This PR does three things: 1. It changes the observation and bias staging for the atmospheric analysis tasks to use JCB templates instead of reading the full JEDI input configuration dictionary in order to construct a list of files to stage. This is cleaner and places fewer constraints on how to initialize the analysis. 2. The ```Jedi``` constructor now takes as input a dictionary that is essentially subset of the ```task_config``` dictionary. This makes the code clearer and less opaque and makes debugging easier. Each dictionary is constructed from a YAML file with configuration parameters for each JEDI application that is run. 3. All JEDI applications and their input YAMLs are now initialized in the initialize job of the ```AtmAnalysis``` and ```AtmEnsAnalysis```. Before, in the ```atmensanl*``` jobs for example, the LETKF solver was initialized in the ```atmensanlinit```cjob, but the LETKF solver and FV3 increment converter were both initialized and executed in the ```atmensanlobs``` and ```atmensanlfv3inc``` jobs respectively. This makes more sense in terms of resource allocation. Addendum: I'm now rolling in the refactoring of the marine B-matrix task into this PR. That makes it also a companion of NOAA-EMC/GDASApp#1346 and NOAA-EMC/jcb-gdas#36. These new changes introduce the ```Jedi``` class and JCB into the marine B-matrix job. Partially resolvesNOAA-EMC/GDASApp#1296 --------- Co-authored-by: RussTreadon-NOAA <[email protected]> Co-authored-by: Rahul Mahajan <[email protected]>
WalterKolczynski-NOAA
pushed a commit
to WalterKolczynski-NOAA/global-workflow
that referenced
this pull request
Nov 22, 2024
…efactoring (NOAA-EMC#2992) This PR is a companion to GDASApp PR NOAA-EMC/GDASApp#1312 (merged) and NOAA-EMC/jcb-gdas#31 (merged). This PR does three things: 1. It changes the observation and bias staging for the atmospheric analysis tasks to use JCB templates instead of reading the full JEDI input configuration dictionary in order to construct a list of files to stage. This is cleaner and places fewer constraints on how to initialize the analysis. 2. The ```Jedi``` constructor now takes as input a dictionary that is essentially subset of the ```task_config``` dictionary. This makes the code clearer and less opaque and makes debugging easier. Each dictionary is constructed from a YAML file with configuration parameters for each JEDI application that is run. 3. All JEDI applications and their input YAMLs are now initialized in the initialize job of the ```AtmAnalysis``` and ```AtmEnsAnalysis```. Before, in the ```atmensanl*``` jobs for example, the LETKF solver was initialized in the ```atmensanlinit```cjob, but the LETKF solver and FV3 increment converter were both initialized and executed in the ```atmensanlobs``` and ```atmensanlfv3inc``` jobs respectively. This makes more sense in terms of resource allocation. Addendum: I'm now rolling in the refactoring of the marine B-matrix task into this PR. That makes it also a companion of NOAA-EMC/GDASApp#1346 and NOAA-EMC/jcb-gdas#36. These new changes introduce the ```Jedi``` class and JCB into the marine B-matrix job. Partially resolvesNOAA-EMC/GDASApp#1296 --------- Co-authored-by: RussTreadon-NOAA <[email protected]> Co-authored-by: Rahul Mahajan <[email protected]>
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This PR is a companion to Global-Workflow PR #2992 and JCB-GDAS PR #31.
It adds two parameters required for the above Global-Workflow PR to the JCB base YAML for the atmosphere.