Intra-tumoral stroma percentage computer

itsper is a simple command line utility which can be used to compute the intra-tumoral stroma percentage (ITSP) biomarker from tissue segmentations of histopathological tumor lesions. It was developed at the AI for Oncology lab.

Note: Tissue segmentations have to be generated using models from the ahcore library.

How to install

To install itsper, run the following commands:

git clone https:/github.com/NKI-AI/itsper/
cd itsper
pip install -e .

Usage

Type itsper -h to know more.

Citing ITSPER

If you use ITSPER in your research, please use the following citation:

@software{itsper,
  author = {Pai, A.},
  month = {10},
  title = {{ITSPER: Intra-Tumoral Stroma Percentage Computer}},
  url = {https://github.com/NKI-AI/itsper},
  version = {0.1.1},
  year = {2024}
}

License

itsper is not intended for clinical use. It is licensed under the MIT License.