Merge pull request #16 from montgomerymt-NIH/patch-1

Proteomics GCP instance update
NIGMS · Nov 21, 2024 · 64cf226 · 64cf226
2 parents 363455b + 37342a0
commit 64cf226
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Showing 2 changed files with 8 additions and 7 deletions.
diff --git a/GoogleCloud/Module1_proteomic_analysis.ipynb b/GoogleCloud/Module1_proteomic_analysis.ipynb
@@ -170,10 +170,11 @@
    "outputs": [],
    "source": [
     "#if (!require(\"BiocManager\", quietly = TRUE))\n",
-    "#    install.packages(\"BiocManager\")\n",
-    "#BiocManager::install(version=\"3.17\")\n",
+    "install.packages(\"BiocManager\")\n",
+    "BiocManager::install(version=\"3.20\")\n",
     "BiocManager::install(\"edgeR\")\n",
-    "BiocManager::install(\"limma\")"
+    "BiocManager::install(\"limma\")\n",
+    "BiocManager::install(\"IRanges\")"
    ]
   },
   {

diff --git a/GoogleCloud/Module2_proteomic_secondary_analysis.ipynb b/GoogleCloud/Module2_proteomic_secondary_analysis.ipynb
@@ -184,11 +184,11 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "if (!require(\"BiocManager\", quietly = TRUE))\n",
-    "    install.packages(\"BiocManager\")\n",
-    "\n",
+    "install.packages(\"BiocManager\")\n",
+    "BiocManager::install(version=\"3.20\")\n",
     "BiocManager::install(\"edgeR\")\n",
-    "BiocManager::install(\"limma\")"
+    "BiocManager::install(\"limma\")\n",
+    "BiocManager::install(\"IRanges\")"
    ]
   },
   {