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update to FatesPFTIndexSwapper.py #451

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Dec 19, 2018
Merged

update to FatesPFTIndexSwapper.py #451

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20 changes: 16 additions & 4 deletions tools/FatesPFTIndexSwapper.py
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Original file line number Diff line number Diff line change
Expand Up @@ -22,6 +22,7 @@
# =======================================================================================

pft_dim_name = 'fates_pft'
prt_dim_name = 'fates_prt_organs'


class timetype:
Expand Down Expand Up @@ -161,19 +162,23 @@ def main(argv):

# Idenfity if this variable has pft dimension
pft_dim_found = -1
prt_dim_found = -1
pft_dim_len = len(fp_in.variables.get(key).dimensions)

for idim, name in enumerate(fp_in.variables.get(key).dimensions):
# Manipulate data
if(name==pft_dim_name):
pft_dim_found = idim

if(name==prt_dim_name):
prt_dim_found = idim


# Copy over the input data
# Tedious, but I have to permute through all combinations of dimension position
if( pft_dim_len == 0 ):
out_var = fp_out.createVariable(key,'f',(fp_in.variables.get(key).dimensions))
out_var.assignValue(float(fp_in.variables.get(key).data))
elif(pft_dim_found==-1):
elif( (pft_dim_found==-1) & (prt_dim_found==-1) ):
out_var = fp_out.createVariable(key,'f',(fp_in.variables.get(key).dimensions))
out_var[:] = in_var[:]
elif( (pft_dim_found==0) & (pft_dim_len==1) ): # 1D fates_pft
Expand All @@ -183,8 +188,9 @@ def main(argv):
tmp_out[id] = fp_in.variables.get(key).data[ipft-1]
out_var[:] = tmp_out


elif( (pft_dim_found==1) & (pft_dim_len==2) ): # 2D hdyro_organ - fate_pft
# 2D hydro_organ - fates_pft
# or.. prt_organ - fates_pft
elif( (pft_dim_found==1) & (pft_dim_len==2) ):
out_var = fp_out.createVariable(key,'f',(fp_in.variables.get(key).dimensions))
dim2_len = fp_in.dimensions.get(fp_in.variables.get(key).dimensions[0])
tmp_out = np.zeros([dim2_len,num_pft_out])
Expand All @@ -200,6 +206,12 @@ def main(argv):
for id,ipft in enumerate(donor_pft_indices):
out_var[id] = fp_in.variables.get(key).data[ipft-1]


elif( (prt_dim_found==0) & (pft_dim_len==2) ): # fates_prt_organs - string_length
out_var = fp_out.createVariable(key,'c',(fp_in.variables.get(key).dimensions))
out_var[:] = in_var[:]


else:
print('This variable has a dimensioning that we have not considered yet.')
print('Please add this condition to the logic above this statement.')
Expand Down