Interface: endrun and cleaning of fates<->hlm globals#180

Merged

bandre-ucar merged 15 commits intoNGEET:masterfrom rgknox:rgknox-endrun-maxcohort-weights

Mar 6, 2017

+944-966

Commits on Jan 20, 2017

Added a FATES wrapper to the CIME shared endrun
rgknox
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merging in the veg dynamcis refactor brought a conflict in FatesGlobals. Fix was trivial, both branches added a subroutine there, both subroutines are still relevant and orthogonal.
rgknox
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Converted global calls to abortutilsmods endrun to fates endrun. Also did some light cleaning of some other calls to the cime shares, mostly just for readability.
rgknox
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Commits on Jan 23, 2017

Partial changes to fixing update sequence of cohort and patch dimension globals.
rgknox
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Commits on Jan 24, 2017

Commits on Jan 25, 2017

This commit completes the re-shuffling of global variables in fates in this phase. The difference is that scalars dictated by the hlm going into fates are now living in FatesInterface mod where the…
rgknox
committed

Commits on Jan 27, 2017

Removed the necessity of allocating fates sites when fates is not running. Combined clm_fates%init and clm_fates%init_allocate. Created a trivial cohort dimensioning scheme for non-fates runs.
rgknox
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Commits on Feb 2, 2017

Merge branch 'master' into rgknox-endrun-maxcohort-weights
rgknox
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Commits on Feb 6, 2017

Commits on Mar 1, 2017

Made a fix to indexing and storage of water-memory.
rgknox
committed

Commits on Mar 2, 2017