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  1. mdpath mdpath Public

    MDPath - A tool for calculating allosteric communication pathways in proteins by analyzing the mutual information of residue dihedral angle movements throughout an MD simulation.

    Python 3 2

  2. OpenMMDL OpenMMDL Public

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    Interface to OpenMM for easy setup of molecular dynamic simulations of protein-ligand complexes

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  3. openmmdlanalysis openmmdlanalysis Public

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  4. pyrod pyrod Public

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    PyRod - Tracing water molecules in molecular dynamics simulations

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