NCAR · climbfuji · Aug 18, 2021 · Jun 6, 2018 · Jun 12, 2018 · Jun 13, 2018
@@ -0,0 +1,6 @@
+### Summary of Issue:
+### Expected behavior and actual behavior:
+### Steps to reproduce the problem (should include model description file(s) or link to publi c repository):
+### What is the changeset ID of the code, and the machine you are using:
+### have you modified the code? If so, it must be committed and available for testing:
+### Screen output or log file showing the error message and context:
@@ -0,0 +1,17 @@
+[ 50 character, one line summary ]
+
+[ Description of the changes in this commit. It should be enough
+  information for someone not following this development to understand. 
+  Lines should be wrapped at about 72 characters. ]
+
+User interface changes?: [ No/Yes ]
+[ If yes, describe what changed, and steps taken to ensure backward compatibilty ]
+
+Fixes: [Github issue #s] And brief description of each issue.
+
+Testing:
+  test removed:
+  unit tests:
+  system tests:
+  manual testing:
+
@@ -23,5 +23,5 @@ jobs:
         if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
     - name: Test with pytest
       run: |
-        export PYTHONPATH=$(pwd)/scripts
+        export PYTHONPATH=$(pwd)/scripts:$(pwd)/scripts/parse_tools
         pytest
@@ -0,0 +1,28 @@
+language: python
+
+python:
+  - "2.7"
+  - "3.6"
+  - "3.7"
+
+branches:
+  only:
+    - feature/capgen
+
+install:
+  - pip install pylint
+
+script:
+  - env PYTHONPATH=scripts:${PYTHONPATH} pylint --rcfile ./test/.pylintrc ./test/unit_tests/test_metadata_table.py
+  - env PYTHONPATH=scripts:${PYTHONPATH} pylint --rcfile ./test/.pylintrc ./test/unit_tests/test_metadata_scheme_file.py
+  - python test/unit_tests/test_metadata_table.py
+  - python test/unit_tests/test_metadata_scheme_file.py
+
+notifications:
+  email:
+    recipients:
+#      - [email protected]
+      - [email protected]
+#      - [email protected]
+    on_success: always # default: change
+    on_failure: always # default: always
@@ -0,0 +1 @@
+build
@@ -0,0 +1,189 @@
+CMAKE_MINIMUM_REQUIRED(VERSION 2.8)
+PROJECT(HelloWorld)
+ENABLE_LANGUAGE(Fortran)
+
+include(CMakeForceCompiler)
+
+SET(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} ${CMAKE_SOURCE_DIR}/cmake/modules)
+
+#-----------------------------------------------------------------------------
+#
+# Create list of SCHEME_FILES, HOST_FILES, and SUITE_FILES
+# Paths should be relative to CMAKE_SOURCE_DIR (this file's directory)
+#
+#-----------------------------------------------------------------------------
+SET(SCHEME_FILES "hello_scheme_files.txt")
+FILE(STRINGS ${SCHEME_FILES} SCHEME_FILENAMES)
+LIST(APPEND HOST_FILES  "hello_world_mod")
+LIST(APPEND SUITE_FILES "hello_world_suite.xml")
+# HOST is the name of the executable we will build.
+SET(HOST "${CMAKE_PROJECT_NAME}")
+# HOST_PROGRAM is the name of the program source files (Fortran and metadata)
+SET(HOST_PROGRAM "hello_world_host")
+
+#-----------------------------------------------------------------------------
+#
+# Set where the CCPP Framework lives
+#
+#-----------------------------------------------------------------------------
+get_filename_component(HELLO_ROOT "${CMAKE_SOURCE_DIR}" DIRECTORY)
+get_filename_component(CCPP_ROOT "${HELLO_ROOT}" DIRECTORY)
+
+#-----------------------------------------------------------------------------
+##############################################################################
+#
+# End of project-specific input
+#
+##############################################################################
+#-----------------------------------------------------------------------------
+
+# By default, no verbose output
+SET(VERBOSITY 0 CACHE STRING "Verbosity level of output (default: 0)")
+# By default, generated caps go in ccpp subdir
+SET(CCPP_CAP_FILES "${CMAKE_BINARY_DIR}/ccpp" CACHE
+  STRING "Location of CCPP-generated cap files")
+
+SET(CCPP_FRAMEWORK ${CCPP_ROOT}/scripts)
+
+# Use rpaths on MacOSX
+set(CMAKE_MACOSX_RPATH 1)
+
+#-----------------------------------------------------------------------------
+# Set a default build type if none was specified
+if(NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
+    #message(STATUS "Setting build type to 'Debug' as none was specified.")
+    #set(CMAKE_BUILD_TYPE Debug CACHE STRING "Choose the type of build." FORCE)
+    message(STATUS "Setting build type to 'Release' as none was specified.")
+    set(CMAKE_BUILD_TYPE Release CACHE STRING "Choose the type of build." FORCE)
+
+    # Set the possible values of build type for cmake-gui
+    set_property(CACHE CMAKE_BUILD_TYPE PROPERTY STRINGS "Debug" "Release"
+                 "MinSizeRel" "RelWithDebInfo")
+endif()
+
+ADD_COMPILE_OPTIONS(-O0)
+
+# CMake 3 version: ADD_EXECUTABLE(${HOST} ${HOST_PROGRAM}.F90)
+if (${CMAKE_Fortran_COMPILER_ID} MATCHES "GNU")
+#  gfortran
+#  MESSAGE("gfortran being used.")
+  ADD_COMPILE_OPTIONS(-fcheck=all)
+  ADD_COMPILE_OPTIONS(-fbacktrace)
+  ADD_COMPILE_OPTIONS(-ffpe-trap=zero)
+  ADD_COMPILE_OPTIONS(-finit-real=nan)
+  ADD_COMPILE_OPTIONS(-ggdb)
+  ADD_COMPILE_OPTIONS(-ffree-line-length-none)
+  ADD_COMPILE_OPTIONS(-cpp)
+elseif (${CMAKE_Fortran_COMPILER_ID} MATCHES "Intel")
+#  ifort
+#  MESSAGE("ifort being used.")
+  #ADD_COMPILE_OPTIONS(-check all)
+  ADD_COMPILE_OPTIONS(-fpe0)
+  ADD_COMPILE_OPTIONS(-warn)
+  ADD_COMPILE_OPTIONS(-traceback)
+  ADD_COMPILE_OPTIONS(-debug extended)
+  ADD_COMPILE_OPTIONS(-fpp)
+elseif (${CMAKE_Fortran_COMPILER_ID} MATCHES "PGI")
+#  pgf90
+#  MESSAGE("pgf90 being used.")
+  ADD_COMPILE_OPTIONS(-g)
+  ADD_COMPILE_OPTIONS(-Mipa=noconst)
+  ADD_COMPILE_OPTIONS(-traceback)
+  ADD_COMPILE_OPTIONS(-Mfree)
+  ADD_COMPILE_OPTIONS(-Mfptrap)
+  ADD_COMPILE_OPTIONS(-Mpreprocess)
+else (${CMAKE_Fortran_COMPILER_ID} MATCHES "GNU")
+  message (FATAL_ERROR "This program has only been compiled with gfortran, pgf90 and ifort. If another compiler is needed, the appropriate flags must be added in ${CMAKE_SOURCE_DIR}/CMakeLists.txt")
+endif (${CMAKE_Fortran_COMPILER_ID} MATCHES "GNU")
+
+#-----------------------------------------------------------------------------
+# CMake Modules
+# Set the CMake module path
+list(APPEND CMAKE_MODULE_PATH "${CCPP_FRAMEWORK}/cmake")
+#-----------------------------------------------------------------------------
+# Set OpenMP flags for C/C++/Fortran
+if (OPENMP)
+  include(detect_openmp)
+  detect_openmp()
+  set (CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OpenMP_C_FLAGS}")
+  set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
+  set (CMAKE_Fortran_FLAGS "${CMAKE_Fortran_FLAGS} ${OpenMP_Fortran_FLAGS}")
+  message(STATUS "Enable OpenMP support for C/C++/Fortran compiler")
+else(OPENMP)
+  message (STATUS "Disable OpenMP support for C/C++/Fortran compiler")
+endif()
+
+# Create metadata and source file lists
+FOREACH(FILE ${SCHEME_FILENAMES})
+  # add absolute pathnames to library  list
+  string(REPLACE ".meta" ".F90" TEMP "${FILE}")
+  get_filename_component(ABS_PATH "${TEMP}" ABSOLUTE)
+  list(APPEND LIBRARY_LIST ${ABS_PATH})
+  # CMake 3 version: target_sources(${HOST} PUBLIC ${ABS_PATH})
+ENDFOREACH(FILE)
+
+FOREACH(FILE ${HOST_FILES})
+  LIST(APPEND HOST_METADATA "${FILE}.meta")
+  # add absolute pathnames to library list
+  get_filename_component(ABS_PATH "${FILE}.F90" ABSOLUTE)
+  LIST(APPEND HOST_SOURCE   "${ABS_PATH}")
+ENDFOREACH(FILE)
+list(APPEND LIBRARY_LIST ${HOST_SOURCE})
+# CMake 3 version: target_sources(${HOST} PUBLIC ${HOST_SOURCE})
+string(REPLACE ";" ".meta," HOST_METADATA "${HOST_FILES}")
+set(HOST_METADATA "${HOST_PROGRAM}.meta,${HOST_METADATA}.meta")
+
+# Run ccpp_capgen
+set(CAPGEN_CMD "${CCPP_FRAMEWORK}/ccpp_capgen.py")
+list(APPEND CAPGEN_CMD "--host-files")
+list(APPEND CAPGEN_CMD "${HOST_METADATA}")
+list(APPEND CAPGEN_CMD "--scheme-files")
+list(APPEND CAPGEN_CMD "${SCHEME_FILES}")
+list(APPEND CAPGEN_CMD "--suites")
+list(APPEND CAPGEN_CMD "${SUITE_FILES}")
+list(APPEND CAPGEN_CMD "--output-root")
+list(APPEND CAPGEN_CMD "${CCPP_CAP_FILES}")
+list(APPEND CAPGEN_CMD "--host-name")
+list(APPEND CAPGEN_CMD "${HOST}")
+while (VERBOSITY GREATER 0)
+  list(APPEND CAPGEN_CMD "--verbose")
+  MATH(EXPR VERBOSITY "${VERBOSITY} - 1")
+endwhile ()
+string(REPLACE ";" " " CAPGEN_STRING "${CAPGEN_CMD}")
+MESSAGE(STATUS "Running: ${CAPGEN_STRING}")
+EXECUTE_PROCESS(COMMAND ${CAPGEN_CMD} WORKING_DIRECTORY ${CMAKE_SOURCE_DIR}
+  OUTPUT_VARIABLE CAPGEN_OUT ERROR_VARIABLE CAPGEN_OUT RESULT_VARIABLE RES)
+MESSAGE(STATUS "${CAPGEN_OUT}")
+if (RES EQUAL 0)
+  MESSAGE(STATUS "CCPP cap generation completed")
+else(RES EQUAL 0)
+  MESSAGE(FATAL_ERROR "CCPP cap generation FAILED: result = ${RES}")
+endif(RES EQUAL 0)
+
+# Retrieve the list of files from datatable.xml and set to CCPP_CAPS
+set(DTABLE_CMD "${CCPP_FRAMEWORK}/ccpp_datafile.py")
+list(APPEND DTABLE_CMD "${CCPP_CAP_FILES}/datatable.xml")
+list(APPEND DTABLE_CMD "--ccpp-files")
+list(APPEND DTABLE_CMD "--separator=\\;")
+string(REPLACE ";" " " DTABLE_STRING "${DTABLE_CMD}")
+MESSAGE(STATUS "Running: ${DTABLE_STRING}")
+EXECUTE_PROCESS(COMMAND ${DTABLE_CMD} OUTPUT_VARIABLE CCPP_CAPS
+                RESULT_VARIABLE RES
+                OUTPUT_STRIP_TRAILING_WHITESPACE ERROR_STRIP_TRAILING_WHITESPACE)
+if (RES EQUAL 0)
+  MESSAGE(STATUS "CCPP cap files retrieved")
+else(RES EQUAL 0)
+  MESSAGE(FATAL_ERROR "CCPP cap file retrieval FAILED: result = ${RES}")
+endif(RES EQUAL 0)
+FOREACH(FILE ${CCPP_CAPS})
+  list(APPEND LIBRARY_LIST ${FILE})
+ENDFOREACH(FILE)
+# CMake 3 version: target_sources(${HOST} PUBLIC ${CCPP_CAPS})
+add_library(HELLOLIB OBJECT  ${LIBRARY_LIST})
+ADD_EXECUTABLE(${HOST} ${HOST_PROGRAM}.F90 $<TARGET_OBJECTS:HELLOLIB>)
+
+INCLUDE_DIRECTORIES(${CCPP_CAP_FILES})
+
+set_target_properties(${HOST} PROPERTIES
+                              COMPILE_FLAGS "${CMAKE_Fortran_FLAGS}"
+                              LINK_FLAGS "${CMAKE_Fortran_FLAGS}")
@@ -0,0 +1,87 @@
+#
+# Makefile for HelloWorld example
+#
+
+FC              = gfortran
+
+# My dirs
+BLDDIR := $(shell pwd -P)
+MKFILE_PATH := $(shell dirname $(abspath $(lastword $(MAKEFILE_LIST))))
+ROOT = $(shell dirname $(shell dirname $(MKFILE_PATH)))
+CAPGEN := $(ROOT)/scripts/ccpp_capgen.py
+CAPGEN_ARGS := --host-files $(MKFILE_PATH)/hello_world_host.meta,$(MKFILE_PATH)/hello_world_mod.meta
+CAPGEN_ARGS += --scheme-files $(MKFILE_PATH)/hello_scheme.meta,$(MKFILE_PATH)/temp_adjust.meta
+CAPGEN_ARGS += --suites $(MKFILE_PATH)/hello_world_suite.xml
+CAPGEN_ARGS += --generate-host-cap --host-name HelloWorld
+#CAPGEN_ARGS += --verbose --verbose
+SRCS_META := $(MKFILE_PATH)/hello_world_host.meta
+SRCS_META += $(MKFILE_PATH)/hello_world_mod.meta
+SRCS_META += $(MKFILE_PATH)/hello_scheme.meta
+SRCS_META += $(MKFILE_PATH)/temp_adjust.meta
+SRCS_XML := $(MKFILE_PATH)/hello_world_suite.xml
+
+INCFLAG = -I
+INCPATH += $(INCFLAG)$(BLDDIR) $(INCFLAG)$(MKFILE_PATH)
+FCFLAGS += -g
+
+# SOURCE FILES
+SRCS_F90 = $(MKFILE_PATH)/hello_scheme.F90 $(MKFILE_PATH)/hello_world_host.F90
+SRCS_F90 += $(MKFILE_PATH)/hello_world_mod.F90
+SRCS_F90 += $(MKFILE_PATH)/temp_adjust.F90
+OBJS_F90 = hello_scheme.o temp_adjust.o hello_world_mod.o hello_world_host.o
+
+# Do we have generated CAP files?
+$(eval CAPOBJS=$(shell if [ -f caplocal.txt ]; then cat caplocal.txt; fi))
+
+.PHONY: all
+all: HelloWorld
+
+# Generate CCPP cap files
+capfiles.txt: $(SRCS_META) $(SRCS_XML)
+	$(CAPGEN) $(CAPGEN_ARGS)
+
+.PHONY: capobjs
+capobjs: capfiles.txt
+	$(shell $(MKFILE_PATH)/mkcaplocal.sh $(BLDDIR)/capfiles.txt)
+	$(eval CAPOBJS=$(shell cat caplocal.txt))
+
+# Human written
+HelloWorld: capobjs $(CAPOBJS) $(OBJS_F90)
+	$(FC) $(FCFLAGS) -o $@ $(CAPOBJS) $(OBJS_F90)
+
+hello_scheme.o: ccpp_kinds.o $(MKFILE_PATH)/hello_scheme.F90
+	$(FC) -c $(INCPATH) $(FCFLAGS) $(MKFILE_PATH)/hello_scheme.F90
+
+temp_adjust.o: ccpp_kinds.o $(MKFILE_PATH)/temp_adjust.F90
+	$(FC) -c $(INCPATH) $(FCFLAGS) $(MKFILE_PATH)/temp_adjust.F90
+
+hello_world_mod.o: ccpp_kinds.o $(MKFILE_PATH)/hello_world_mod.F90
+	$(FC) -c $(INCPATH) $(FCFLAGS) $(MKFILE_PATH)/hello_world_mod.F90
+
+hello_world_host.o: HelloWorld_ccpp_cap.o ccpp_kinds.o
+hello_world_host.o: $(MKFILE_PATH)/hello_world_host.F90
+	$(FC) -c $(INCPATH) $(FCFLAGS) $(MKFILE_PATH)/hello_world_host.F90
+
+# CCPP generated
+ccpp_kinds.F90: capobjs
+
+HelloWorld_ccpp_cap.F90: capobjs
+
+ccpp_hello_world_suite_cap.F90: capobjs
+
+ccpp_kinds.o: ccpp_kinds.F90
+	$(FC) -c $(INCPATH) $(FCFLAGS) ccpp_kinds.F90
+
+HelloWorld_ccpp_cap.o: ccpp_kinds.o
+HelloWorld_ccpp_cap.o: hello_world_mod.o ccpp_hello_world_suite_cap.o
+HelloWorld_ccpp_cap.o: HelloWorld_ccpp_cap.F90
+	$(FC) -c $(INCPATH) $(FCFLAGS) HelloWorld_ccpp_cap.F90
+
+ccpp_hello_world_suite_cap.o: ccpp_kinds.o ccpp_hello_world_suite_cap.F90
+	$(FC) -c $(INCPATH) $(FCFLAGS) ccpp_hello_world_suite_cap.F90
+
+.PHONY: clean
+clean:
+	rm -f $(shell if [ -f capfiles.txt ]; then cat capfiles.txt; fi)
+	rm -f *.o *.mod HelloWorld capfiles.txt caplocal.txt
+	rm -rf HelloWorld.dSYM