Code

Upgrade antiSMASH 7.1.0#339

Code

Merged

matinnuhamunada merged 20 commits intomainNBChub/bgcflow:mainfrom dev-0.9.1NBChub/bgcflow:dev-0.9.1Copy head branch name to clipboardApr 22, 2024

+212-86

Commits

Commits on Mar 13, 2024

• chore: handle patch versioning in antiSMASH

  matinnuhamunada

  committed
  0485bff

Commits on Apr 3, 2024

• fix: improve symlink generation for downsteram BGC prep and sanitize illegal character for BiG-SCAPE

  matinnuhamunada

  committed
  096a925

• fix: handle incompatible json schema from older antiSMASH version

  matinnuhamunada

  committed
  d50f6a9

• feat: upgrade antiSMASH version 7.1.0

  matinnuhamunada

  committed
  42533e9

• feat: upgrade BiG-SCAPE version 1.1.9

  matinnuhamunada

  committed
  5cf8be8

Commits on Apr 17, 2024

• fix: update example BGC project to antismash 7.1.0

  matinnuhamunada

  committed
  90b6d33

• chore: apply string formatting for project columns

  matinnuhamunada

  committed
  fe13583

• fix: handle input when both input_file and gbk_path in config sample

  matinnuhamunada

  committed
  a38fb1f

• feat: upgrade duckdb and metabase

  matinnuhamunada

  committed
  6bb8d07

• fix: handle empty values

  matinnuhamunada

  committed
  9750419

• chore: add getphylo example in config

  matinnuhamunada

  committed
  5b02478

• chore: turn off getphylo as it is still in experimental phase

  matinnuhamunada

  committed
  3a78df6

• chore: pin version 0.2.1 for getphylo

  matinnuhamunada

  committed
  138cc5f

Commits on Apr 18, 2024

• feat: upgrade checkm

  matinnuhamunada

  committed
  dbe5c6c

• feat: upgrade seqfu

  matinnuhamunada

  committed
  bf77b2b

• feat: upgrade clinker

  matinnuhamunada

  committed
  d911b29

• feat: upgrade cblaster

  matinnuhamunada

  committed
  a1f6da0

• fix: correct log path for patric download

  matinnuhamunada

  committed
  ef70724

• feat: add script to upload database to motherduck

  matinnuhamunada

  committed
  29290e6

• chore: bump version to 0.9.0

  matinnuhamunada

  committed
  c587e0c