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Fix problems with dots in gene symbols #45

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Feb 20, 2024
Merged

Fix problems with dots in gene symbols #45

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1 change: 1 addition & 0 deletions bin/filter.py
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Original file line number Diff line number Diff line change
Expand Up @@ -56,6 +56,7 @@ def aggregate_duplicate_var(adata, aggr_fun=np.mean):
# Convert varnames to upper case
adata.var_names = adata.var_names.str.upper()
adata.var_names = adata.var_names.str.replace("_", "-")
adata.var_names = adata.var_names.str.replace(".", "-")

print("Aggregating duplicate varnames")
# Calculate mean of same-named genes
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