Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Begin building annotation, training & testing dataset + artifacts #1

Open
wants to merge 42 commits into
base: main
Choose a base branch
from

Conversation

Jesssullivan
Copy link

@Jesssullivan Jesssullivan commented Mar 16, 2021

Beginning to fill in preprocessing steps to construct a sample training & testing dataset + json artifacts for a Mushroom Observer annotator tool.

@Jesssullivan Jesssullivan marked this pull request as ready for review March 17, 2021 05:08
@Jesssullivan Jesssullivan marked this pull request as draft March 18, 2021 16:53
@Jesssullivan
Copy link
Author

Jesssullivan commented Mar 19, 2021

Looking forward to feedback, thoughts, ideas & directions! This will hopefully help us get started.

Recently discovered @Olament's fun mycology projects as well. Any interest in integrating with & expanding this neat project MycologyBot with MO data? I am hoping to poke around and fiddle with the DeepMushroom & MycologyBot repos this weekend.

todos:

  • Add MO annotation tool!
  • Experiment with training lineages described by Danish Mycology Society- V1, V2)

@Jesssullivan Jesssullivan marked this pull request as ready for review March 19, 2021 19:24
@Jesssullivan
Copy link
Author

Jesssullivan commented Mar 20, 2021

ok, now the web annotator is working over here and can process Mushroom Observer annotation tasks generated by python3 preprocess.
To try this out, snag an annotation task:

# ...along the lines of:
wget https://mo.columbari.us/static/mo_example_task.tar.gz
tar -xf mo_example_task.tar.gz

...then select this directory to upload at the annotation landing screen.

(The vague idea here was to maybe recycle some existing Merlin AI model training stuff, I think @gvanhorn38 was maybe hoping to add more variety and examples for future projects just like this one)

More notes here:
https://jesssullivan.github.io/mo-image-identifier/

@Jesssullivan
Copy link
Author

alright, added the methods for @mo-nathan 's second csv format. the above annotation json / artifacts / images @ mo.columbari.us have been updated too with the 900 image dataset.
Many more notes and whatnot added here too:
https://jesssullivan.github.io/mo-image-identifier/

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant