Minor update #381
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| name: Continuous builds | |
| on: | |
| push: | |
| branches: [ main, development, experimental, test* ] | |
| pull_request: | |
| branches: [ main, development, experimental, test* ] | |
| jobs: | |
| pre-commit: | |
| name: Format | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - uses: pre-commit/[email protected] | |
| with: | |
| extra_args: --hook-stage manual --all-files | |
| build: | |
| name: Build for Python ${{ matrix.python-version }} on ${{ matrix.runs-on }} | |
| runs-on: ${{ matrix.runs-on }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [ "3.8", "3.9", "3.10", "3.11", "3.12" ] | |
| runs-on: [ubuntu-latest, macos-latest, windows-latest] | |
| exclude: | |
| - runs-on: macos-latest | |
| python-version: "3.8" | |
| - runs-on: macos-latest | |
| python-version: "3.9" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install HDF5 for pytables on macos-14 | |
| if: ${{ matrix.runs-on == 'macos-latest' }} | |
| run: | | |
| brew install hdf5 | |
| - name: Install package | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install 'numpy<2.0.0' # due to lingering issues with other modules & numpy... | |
| pip install .[dev] | |
| - name: Lint with flake8 | |
| run: | | |
| flake8 . --count --exit-zero --show-source --max-line-length=127 --statistics | |
| - name: List packages so far | |
| run: | | |
| pip list | |
| - name: Run simple examples | |
| run: | | |
| cd examples | |
| python document.py | |
| git diff | |
| cd test | |
| python test.py | |
| - name: Test NeuroML examples | |
| run: | | |
| cd examples/neuroml2 | |
| python neuroml2_spec.py | |
| # Note: NeuroML files will be validated with OMV below | |
| - name: Test SBML examples | |
| run: | | |
| cd examples/sbml | |
| ./regenerateAndTest.sh | |
| - name: Run pytest | |
| run: | | |
| pytest tests -v | |
| - name: Test NeuroMLlite | |
| run: | | |
| git clone --branch development https://github.com/NeuroML/NeuroMLlite.git | |
| cd NeuroMLlite | |
| # pip install . # Use versions of neuroml libs as set in modelspec's setup.cfg -> dev -> NeuroMLlite | |
| cd examples | |
| python Example1.py | |
| - name: Install MDF | |
| run: | | |
| git clone --branch development https://github.com/ModECI/MDF.git | |
| cd MDF | |
| pip install . | |
| cd examples/MDF | |
| python arrays.py -run # test one example | |
| - name: Build Documentation | |
| run: | | |
| # Note: contributors generation below fails on py 3.7 due to pandas version... | |
| pip install .[docs] | |
| cd docs | |
| python generate.py | |
| python contributors.py | |
| cd sphinx | |
| make clean | |
| make html | |
| - name: Install and test with OMV | |
| if: ${{ matrix.runs-on != 'windows-latest' }} | |
| run: | | |
| # Note: OMV not well tested on Windows... | |
| pip install git+https://github.com/OpenSourceBrain/osb-model-validation | |
| pip install scipy sympy matplotlib cython pandas tables | |
| # Run OMV tests on all engines | |
| cd examples | |
| omv all -V | |
| omv list -V # list installed engines | |
| - name: Final version info | |
| run: | | |
| pip list | |
| env |