Analysis scripts of single vmpfc neuron projectome and transcriptome analysis.
Large data files, including: pfc_all.seuratmerge.raw.bar5.Robj, pfc_seurat_merge_anno.h5ad, integrated_all_nc2020_major_celltype.Robj, sub_trim_seurat_pipe.Robj, all_cell_inDD_sobj.RData, integrated_all_nc2020_major_celltype.Robj, GSE161936_Lui_Nguyen_Seuratobjects.RData, pfc_ab_ss.Robj, PFC_excitatory_saline_sobj.RData, exn.sub_with_valid_projection.Robj can be found https://figshare.com/projects/High-throughput_mapping_of_single-neuron_projection_and_molecular_features_by_retrograde_barcoded_labeling/150207
Paper version: Published version (https://elifesciences.org/articles/85419), preprint v1 (https://www.biorxiv.org/content/10.1101/2021.05.16.444258v1), preprint v2 (https://www.biorxiv.org/content/10.1101/2021.05.16.444258v2.abstract).
GEO ACcession: GSE210174(https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE210174)