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cellplato

A place for cellPLATO

exampledata contains: masks generated by Cellpose (tif image sequence inside two separate folders with suffix _cp_masks), two _tracks.h5 files containing segmentations and tracks from Bayesian Tracker, and a single csv file 'lab_dr_df.csv' which is the output of cellplato. 'lab_dr_df.csv' contains many features which are metrics obtains through calculations based on segmentations and tracks. The 'particle' column is the track ID.

examplerawdata is an LFS link to raw data used to generate masks

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