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multichromosome revisions #1432

multichromosome revisions

multichromosome revisions #1432

Triggered via pull request February 9, 2025 17:48
@bhallerbhaller
synchronize #470
multichrom
Status Failure
Total duration 9m 25s
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tests.yml

on: pull_request
canceller
3s
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Matrix: tests-Unix-CLI
Matrix: tests-Unix-GUI
Matrix: tests-Windows-CLI
Matrix: tests-Windows-GUI
Matrix: tests-windows-latest-pacman
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14 errors and 13 warnings
tests-Unix-CLI (ubuntu-20.04, 7, 3.8)
The process '/home/runner/miniconda3/condabin/mamba' failed with exit code 1
tests-Unix-GUI (ubuntu-20.04, 5.9.5, 7)
Process completed with exit code 2.
tests-Unix-GUI (ubuntu-20.04, 5.15.2, 11)
Process completed with exit code 2.
tests-Unix-GUI (ubuntu-22.04, 5.15.2, 12)
Process completed with exit code 2.
tests-Unix-GUI (ubuntu-22.04, 6.7.2, 12)
Process completed with exit code 2.
tests-Unix-CLI (ubuntu-20.04, 11, 3.9)
Process completed with exit code 2.
tests-Unix-CLI (macos-13, 3.9)
Process completed with exit code 2.
tests-Unix-GUI (macos-15, 6.7.2)
Process completed with exit code 2.
tests-Unix-CLI (macos-15, 3.9)
Process completed with exit code 2.
tests-Unix-GUI (macos-13, 5.15.2)
Process completed with exit code 2.
tests-Windows-GUI (mingw64, x86_64)
Process completed with exit code 2.
tests-Windows-GUI (ucrt64, ucrt-x86_64)
Process completed with exit code 2.
tests-Windows-CLI (mingw64, x86_64, 3.8)
Process completed with exit code 2.
tests-Windows-CLI (ucrt64, ucrt-x86_64, 3.8)
Process completed with exit code 2.
tests-Unix-CLI (ubuntu-20.04, 7, 3.8)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
tests-Unix-CLI (ubuntu-20.04, 7, 3.8)
error libmamba Error when extracting package: Could not chdir info/recipe/parent/patches/PR100102-2.a1b3484a8e6c53c8084723e3f1738d402374198e.patch
tests-Unix-CLI (ubuntu-20.04, 7, 3.8)
Found incorrect download: _openmp_mutex. Aborting
tests-Unix-CLI (ubuntu-20.04, 7, 3.8)
# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<< Traceback (most recent call last): File "/home/runner/miniconda3/lib/python3.12/site-packages/conda/exception_handler.py", line 18, in __call__ return func(*args, **kwargs) ^^^^^^^^^^^^^^^^^^^^^ File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 960, in exception_converter raise e File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 953, in exception_converter exit_code = _wrapped_main(*args, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 899, in _wrapped_main result = do_call(parsed_args, p) ^^^^^^^^^^^^^^^^^^^^^^^ File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 768, in do_call exit_code = create(args, parser) ^^^^^^^^^^^^^^^^^^^^ File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 603, in create return install(args, parser, "create") ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/runner/miniconda3/lib/python3.12/site-packages/mamba/mamba.py", line 559, in install transaction.fetch_extract_packages() RuntimeError: Found incorrect download: _openmp_mutex. Aborting `$ /home/runner/miniconda3/condabin/mamba create --name anaconda-client-env python=3.8` environment variables: CIO_TEST=<not set> CONDA=/home/runner/miniconda3 CONDA_ROOT=/home/runner/miniconda3 CURL_CA_BUNDLE=<not set> DEPLOYMENT_BASEPATH=/opt/runner GITHUB_EVENT_PATH=/home/runner/work/_temp/_github_workflow/event.json GITHUB_PATH=/home/runner/work/_temp/_runner_file_commands/add_path_8378b0c0-4ace- 49ce-929d-98c7a92f1718 LD_PRELOAD=<not set> PATH=/home/runner/miniconda3/condabin:/snap/bin:/home/runner/.local/bin:/op t/pipx_bin:/home/runner/.cargo/bin:/home/runner/.config/composer/vendo r/bin:/usr/local/.ghcup/bin:/home/runner/.dotnet/tools:/usr/local/sbin :/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/ga mes:/snap/bin REQUESTS_CA_BUNDLE=<not set> SELENIUM_JAR_PATH=/usr/share/java/selenium-server.jar SSL_CERT_FILE=<not set> SWIFT_PATH=/usr/share/swift/usr/bin active environment : None user config file : /home/runner/.condarc populated config files : /home/runner/miniconda3/.condarc /home/runner/.condarc conda version : 24.11.3 conda-build version : not installed python version : 3.12.8.final.0 solver : libmamba (default) virtual packages : __archspec=1=zen2 __conda=24.11.3=0 __glibc=2.31=0 __linux=5.15.0=0 __unix=0=0 base environment : /home/runner/miniconda3 (writable) conda av data dir : /home/runner/miniconda3/etc/conda conda av metadata url : None channel URLs : https://conda.anaconda.org/conda-forge/linux-64 https://conda.anaconda.org/conda-forge/noarch package cache : /home/runner/conda_pkgs_dir envs directories : /home/runner/miniconda3/envs /home/runner/.conda/envs platform : linux-64 user-agent : conda/24.11.3 requests/2.32.3 CPython/3.12.8 Linux/5.15.0-1078-azure ubuntu/20.04.6 glibc/2.31 solver/libmamba conda-libmamba-solver/24.9.0 libmambapy/1.5.12 UID:GID : 1001:127 netrc file : None offline mode : False An unexpected error has occurred. Conda has prepared the above report. If you suspect this error is being caused by a malfunctioning plugi
tests-Unix-CLI (ubuntu-20.04, 11, 3.9)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
tests-Unix-CLI (macos-13, 3.9)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
tests-Unix-CLI (macos-15, 3.9)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
tests-Windows-CLI (mingw64, x86_64, 3.8)
'nodefaults' channel detected: will remove 'defaults' if added implicitly. In the future, 'nodefaults' to remove 'defaults' won't be supported. Please set 'conda-remove-defaults' = 'true' in setup-miniconda to remove this warning.
tests-Windows-CLI (mingw64, x86_64, 3.8)
C:\Users\runneradmin\miniconda3\Lib\site-packages\conda\base\context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
tests-Windows-CLI (mingw64, x86_64, 3.8)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
tests-Windows-CLI (ucrt64, ucrt-x86_64, 3.8)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
tests-Windows-CLI (ucrt64, ucrt-x86_64, 3.8)
'nodefaults' channel detected: will remove 'defaults' if added implicitly. In the future, 'nodefaults' to remove 'defaults' won't be supported. Please set 'conda-remove-defaults' = 'true' in setup-miniconda to remove this warning.
tests-Windows-CLI (ucrt64, ucrt-x86_64, 3.8)
C:\Users\runneradmin\miniconda3\Lib\site-packages\conda\base\context.py:201: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(