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Incorrect site symmetry symbol for some Wyckoff sites #295

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kazeevn opened this issue Nov 22, 2024 · 4 comments
Closed

Incorrect site symmetry symbol for some Wyckoff sites #295

kazeevn opened this issue Nov 22, 2024 · 4 comments

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@kazeevn
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kazeevn commented Nov 22, 2024

Hello!

pyXtal reports that Wyckoff sites f and e in group 150 have site symmetry 1. International Tables for Crystallography (2016). Vol. A, ch. 2.3, Space group 150. lists site symmetry as .2.; another source.

>>> from pyxtal import Group
>>> Group(150)
-- Spacegroup --# 150 (P321)--
6g	site symm: 1
3f	site symm: 1
3e	site symm: 1
2d	site symm: 3..
2c	site symm: 3..
1b	site symm: 32.
1a	site symm: 32.

Version: latest commit e086219

@kazeevn kazeevn changed the title Incorrect site symmetry for Wyckoff sites f & e in group 150 Incorrect site symmetry symbol for some Wyckoff sites Nov 22, 2024
@kazeevn
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kazeevn commented Nov 22, 2024

And some more:

{
150: {
    "f": ".2.",
    "e": ".2."},
152: {
    "a": ".2.",
    "b": ".2."},
154: {
    "a": ".2.",
    "b": ".2."},
155: {
    "e": ".2",
    "d": ".2"},
164: {
    "g": ".2.",
    "h": ".2."},
165: {
    "f": ".2."},
166: {
    "f": ".2",
    "g": ".2"},
167: {
    "e": ".2"
},
177: {
    "j": ".2.",
    "k": ".2."},
178: {
    "a": ".2."
},
179: {
    "a": ".2."
},
180: {
    "g": ".2.",
    "h": ".2."},
181: {
    "g": ".2.",
    "h": ".2."},
182: {
    "g": ".2."},
190: {
    "g": ".2."},
191: {
    "o":  ".m."},
192: {
    "j": ".2."},
194: {
    "i": ".2.",
    "k": ".m."}
}

@qzhu2017 qzhu2017 reopened this Nov 29, 2024
@qzhu2017
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This is related to the interpretation of site symmetry class. Needs to look it again.

qzhu2017 added a commit that referenced this issue Nov 29, 2024
qzhu2017 added a commit that referenced this issue Nov 29, 2024
@qzhu2017
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@kazeevn I think this bug has been fixed after my commits today.

Can you try to run the updated code from the master branch with more examples?

I will close this issue after getting a green light from you.

@kazeevn
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kazeevn commented Nov 30, 2024

I found the problem by discovering that some Wyckoff positions with the same symmetry had different multiplicity, this is no longer that case: check_site_symmetry.py.gz, the problem is fixed as far as I can tell. Thank you!

@qzhu2017 qzhu2017 closed this as completed Jan 6, 2025
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