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MarwaTawfikBadawy/README.md

Hi there my name is Marwa 👋🧬🔬

I am a bioinformatician who likes to work on analyzing Next Generation Sequencing (NGS) data, specifically working with Variant Call Format (VCF) files to identify novel variants associated with neurological diseases, or any other medical condition.

🚀 Languages & Tools:

Python R Bash

🧬 Bioinformatics Tools

SAMtools BCFtools VCFtools VEP

Pipeline Data Analysis

graph TD;
  A[Raw Data] -->|Preprocessing| B[Quality Check]
  B -->|Variant Calling| C[Custom Pipeline]
  C -->|Annotation| D[Biological Insights]
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GitHub Contribution Graph

🎓 Background

I hold a PhD in Applied Sciences with a specialization in biotechnology and bioinformatics. From the American University in Cairo (AUC) Class of 2025

Feel free to explore my repositories or connect with me for collaboration opportunities!

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  1. Parkinsons-VariantPipeline Parkinsons-VariantPipeline Public

    Analysis of the gVCF files of prodromal stage of Parkinson's Disease (PD) Patients

    Shell

  2. Diabetes_Analysis Diabetes_Analysis Public

    Analyzing In vivo antidiabetic potential of the baobab fruit using a streptozotocin (STZ) induced diabetic rat model. Histopathological and immune-histochemical investigations revealed hepatoprotec…

    R

  3. Biostatistics Biostatistics Public

    This repository includes the datasets that was used throughout my biostatistics course

    R

  4. Overlapped_Genes Overlapped_Genes Public

    This repository includes the analysis of the overlapped genes in Alzheimer's, Parkinson's, and Dementia Diseases

    Jupyter Notebook