Merge #1883 (DougBurke) - Update setup_ds9.sh for DS9 8.5 #109
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| name: Conda CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - '*' | |
| pull_request: | |
| env: | |
| xspec_channel: "xspec/label/test" | |
| CONDA_BUILD_SYSROOT: ${{ github.workspace }}/10.14SDK/MacOSX10.14.sdk | |
| jobs: | |
| tests: | |
| defaults: | |
| run: | |
| shell: bash | |
| name: ${{ matrix.name }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| include: | |
| - name: MacOS Full Build | |
| os: macos-latest | |
| python-version: "3.10" | |
| install-type: develop | |
| fits: astropy | |
| test-data: submodule | |
| matplotlib-version: 3 | |
| xspec-version: 12.13.1 | |
| # run xvfb with this display | |
| display: :99 | |
| - name: Linux Minimum Setup (Python 3.9) | |
| os: ubuntu-latest | |
| python-version: "3.9" | |
| numpy-version: "1.21" | |
| install-type: develop | |
| test-data: none | |
| - name: Linux Minimum Setup (Python 3.11) | |
| os: ubuntu-latest | |
| python-version: "3.11" | |
| numpy-version: "1.23" | |
| install-type: develop | |
| test-data: none | |
| - name: Linux Full Build (Python 3.11) | |
| os: ubuntu-latest | |
| python-version: "3.11" | |
| install-type: develop | |
| fits: astropy | |
| test-data: submodule | |
| matplotlib-version: 3 | |
| xspec-version: 12.13.1 | |
| - name: Linux Full Build (Python 3.10) | |
| os: ubuntu-latest | |
| python-version: "3.10" | |
| install-type: develop | |
| fits: astropy | |
| test-data: submodule | |
| matplotlib-version: 3 | |
| xspec-version: 12.13.0c | |
| - name: Linux Full Build (Python 3.9) | |
| os: ubuntu-latest | |
| python-version: "3.9" | |
| install-type: develop | |
| fits: astropy | |
| test-data: submodule | |
| matplotlib-version: 3 | |
| xspec-version: 12.12.0g | |
| - name: Linux Build (w/o Astropy or Xspec) | |
| os: ubuntu-latest | |
| python-version: "3.11" | |
| install-type: install | |
| test-data: package | |
| matplotlib-version: 3 | |
| - name: Linux Build (w/o Matplotlib, Xspec, or test data) | |
| os: ubuntu-latest | |
| python-version: "3.9" | |
| numpy-version: "1.21" | |
| install-type: develop | |
| fits: astropy | |
| test-data: none | |
| steps: | |
| - name: Checkout Code | |
| uses: actions/[email protected] | |
| with: | |
| submodules: 'True' | |
| # https://stackoverflow.com/questions/63648591/how-to-install-x11-before-testing-with-github-actions-for-macos | |
| - name: Install XQuartz on macOS | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew install --cask xquartz | |
| - name: Conda Setup | |
| env: | |
| PYTHONVER: ${{ matrix.python-version }} | |
| NUMPYVER: ${{ matrix.numpy-version }} | |
| FITSBUILD: ${{ matrix.fits }} | |
| MATPLOTLIBVER: ${{ matrix.matplotlib-version }} | |
| XSPECVER: ${{ matrix.xspec-version }} | |
| run: | | |
| source .github/scripts/setup_conda.sh | |
| - name: Conda Setup (Xspec and DS9) | |
| if: matrix.xspec-version != '' | |
| env: | |
| XSPECVER: ${{ matrix.xspec-version }} | |
| run: | | |
| source ${CONDA}/etc/profile.d/conda.sh | |
| conda activate build | |
| source .github/scripts/setup_ds9.sh | |
| source .github/scripts/setup_xspec.sh | |
| - name: Start Xvfb (macOS) | |
| if: runner.os == 'macOS' | |
| env: | |
| DISPLAY: ${{ matrix.display }} | |
| run: | | |
| sudo /opt/X11/bin/Xvfb ${DISPLAY} -ac -screen 0 1024x768x8 & | |
| - name: Build Sherpa (install) | |
| if: matrix.install-type == 'install' | |
| env: | |
| PYTHON_LDFLAGS: " " | |
| run: | | |
| source ${CONDA}/etc/profile.d/conda.sh | |
| conda activate build | |
| pip install . --verbose | |
| - name: Build Sherpa (develop) | |
| if: matrix.install-type == 'develop' | |
| env: | |
| PYTHON_LDFLAGS: " " | |
| run: | | |
| source ${CONDA}/etc/profile.d/conda.sh | |
| conda activate build | |
| pip install -e . --verbose | |
| - name: Install the test data? | |
| if: matrix.test-data == 'package' | |
| run: | | |
| source ${CONDA}/etc/profile.d/conda.sh | |
| conda activate build | |
| pip install ./sherpa-test-data | |
| pip install pytest-xvfb | |
| - name: Remove submodule | |
| if: matrix.test-data == 'none' || matrix.test-data == 'package' | |
| run: | | |
| git submodule deinit -f . | |
| # run the smoke test first as it's small/quick to do | |
| - name: Smoke Tests | |
| env: | |
| XSPECVER: ${{ matrix.xspec-version }} | |
| FITS: ${{ matrix.fits }} | |
| run: | | |
| if [ -n "${XSPECVER}" ]; then XSPECTEST="-x -d"; fi | |
| if [ -n "${FITS}" ] ; then FITSTEST="-f ${FITS}"; fi | |
| smokevars="${XSPECTEST} ${FITSTEST} -v 3" | |
| echo "** smoke test: ${smokevars}" | |
| source ${CONDA}/etc/profile.d/conda.sh | |
| conda activate build | |
| cd /home | |
| sherpa_smoke ${smokevars} | |
| - name: Internal check | |
| if: matrix.test-data == 'submodule' && matrix.install-type != 'develop' | |
| env: | |
| INSTALLTYPE: ${{ matrix.install-type }} | |
| run: | | |
| # At the moment "Submodule Tests" requires the develop | |
| # install-type, otherwise the "python setup.py test" call will | |
| # lead to the develop build to be re-run, meaning that the | |
| # install option is not tested. When we change to pytest we | |
| # can switch to something like 'cd $HOME; pytest sherpa' | |
| # | |
| echo "ERROR: submodule test can not be run with install-type=${INSTALLTYPE}" | |
| exit 1 | |
| - name: Submodule Tests | |
| if: matrix.test-data == 'submodule' | |
| env: | |
| INSTALLTYPE: ${{ matrix.install-type }} | |
| run: | | |
| if [ "$RUNNER_OS" == "macOS" ]; then | |
| # make sure pytext-xvfb can find Xvfb | |
| export PATH="${PATH}:/opt/X11/bin" | |
| fi | |
| source ${CONDA}/etc/profile.d/conda.sh | |
| conda activate build | |
| conda install -yq pytest-cov | |
| python setup.py -q test -a "--cov sherpa --cov-report xml" | |
| - name: sherpa_test Tests | |
| if: matrix.test-data == 'package' || matrix.test-data == 'none' | |
| run: | | |
| source ${CONDA}/etc/profile.d/conda.sh | |
| conda activate build | |
| conda install -yq pytest-cov | |
| cd $HOME | |
| sherpa_test --cov sherpa --cov-report xml | |
| - name: upload coverage | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| # only select the reports that we know are coverage reports, from linux conda, mac conda, and pip | |
| files: /home/runner/work/sherpa/sherpa/coverage.xml,/Users/runner/work/sherpa/sherpa/coverage.xml,/home/runner/coverage.xml | |
| verbose: true |