Merge #2188 (DougBurke) - TEST: address numpy 2 changes to output for… #131
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| name: Conda CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - '*' | |
| pull_request: | |
| #Reduces GH Action duplication: | |
| # Cancels the previous pipeline for this ref it is still running | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| xspec_channel: "https://cxc.cfa.harvard.edu/conda/xspec" | |
| CONDA_BUILD_SYSROOT: ${{ github.workspace }}/11.0SDK/MacOSX11.0.sdk | |
| jobs: | |
| tests: | |
| defaults: | |
| run: | |
| shell: bash | |
| name: ${{ matrix.name }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| include: | |
| - name: MacOS Full Build | |
| os: macos-12 | |
| python-version: "3.10" | |
| install-type: develop | |
| fits: astropy | |
| test-data: submodule | |
| matplotlib-version: 3 | |
| xspec-version: 12.14.0i | |
| - name: Linux Minimum Setup (Python 3.10) | |
| os: ubuntu-latest | |
| python-version: "3.10" | |
| numpy-version: "1.24" | |
| install-type: develop | |
| test-data: none | |
| - name: Linux Minimum Setup (Python 3.11) | |
| os: ubuntu-latest | |
| python-version: "3.11" | |
| numpy-version: "1.24" | |
| install-type: develop | |
| test-data: none | |
| - name: Linux Full Build (Python 3.12) | |
| os: ubuntu-latest | |
| python-version: "3.12" | |
| install-type: develop | |
| fits: astropy | |
| test-data: submodule | |
| matplotlib-version: 3 | |
| bokeh-version: 3 | |
| xspec-version: 12.14.0i | |
| - name: Linux Full Build (Python 3.11) | |
| os: ubuntu-latest | |
| python-version: "3.11" | |
| install-type: develop | |
| fits: astropy | |
| test-data: submodule | |
| matplotlib-version: 3 | |
| bokeh-version: 3 | |
| xspec-version: 12.14.0i | |
| - name: Linux Full Build (Python 3.10) | |
| os: ubuntu-latest | |
| python-version: "3.10" | |
| install-type: develop | |
| fits: astropy | |
| test-data: submodule | |
| matplotlib-version: 3 | |
| xspec-version: 12.13.1 | |
| - name: Linux Build (w/o Astropy or Xspec) | |
| os: ubuntu-latest | |
| python-version: "3.11" | |
| install-type: install | |
| test-data: package | |
| matplotlib-version: 3 | |
| - name: Linux Build (w/o Matplotlib, Xspec, or test data) | |
| os: ubuntu-latest | |
| python-version: "3.12" | |
| numpy-version: "1.26" | |
| install-type: develop | |
| fits: astropy | |
| test-data: none | |
| steps: | |
| - name: Checkout Code | |
| uses: actions/[email protected] | |
| with: | |
| submodules: 'True' | |
| # https://stackoverflow.com/questions/63648591/how-to-install-x11-before-testing-with-github-actions-for-macos | |
| - name: Install XQuartz on macOS | |
| if: runner.os == 'macOS' | |
| run: | | |
| brew install --cask xquartz | |
| - name: Conda Setup | |
| env: | |
| PYTHONVER: ${{ matrix.python-version }} | |
| NUMPYVER: ${{ matrix.numpy-version }} | |
| FITSBUILD: ${{ matrix.fits }} | |
| MATPLOTLIBVER: ${{ matrix.matplotlib-version }} | |
| BOKEHVER: ${{ matrix.bokeh-version }} | |
| XSPECVER: ${{ matrix.xspec-version }} | |
| run: | | |
| source .github/scripts/setup_conda.sh | |
| - name: Conda Setup (Xspec and DS9) | |
| if: matrix.xspec-version != '' | |
| env: | |
| XSPECVER: ${{ matrix.xspec-version }} | |
| run: | | |
| source ${CONDA}/etc/profile.d/conda.sh | |
| conda activate build | |
| if [ "$RUNNER_OS" != "macOS" ]; then | |
| source .github/scripts/setup_ds9.sh | |
| # We need xvfb to run the tests so ensure it's installed | |
| pip install pytest-xvfb | |
| fi | |
| source .github/scripts/setup_xspec.sh | |
| - name: Build Sherpa (install) | |
| if: matrix.install-type == 'install' | |
| env: | |
| PYTHON_LDFLAGS: " " | |
| run: | | |
| source ${CONDA}/etc/profile.d/conda.sh | |
| conda activate build | |
| pip install .[test] --verbose | |
| - name: Build Sherpa (develop) | |
| if: matrix.install-type == 'develop' | |
| env: | |
| PYTHON_LDFLAGS: " " | |
| run: | | |
| source ${CONDA}/etc/profile.d/conda.sh | |
| conda activate build | |
| pip install -e .[test] --verbose | |
| - name: Install the test data? | |
| if: matrix.test-data == 'package' | |
| run: | | |
| source ${CONDA}/etc/profile.d/conda.sh | |
| conda activate build | |
| pip install ./sherpa-test-data | |
| - name: Remove submodule | |
| if: matrix.test-data == 'none' || matrix.test-data == 'package' | |
| run: | | |
| git submodule deinit -f . | |
| # run the smoke test first as it's small/quick to do | |
| - name: Smoke Tests | |
| env: | |
| XSPECVER: ${{ matrix.xspec-version }} | |
| FITS: ${{ matrix.fits }} | |
| run: | | |
| if [ -n "${XSPECVER}" ]; then XSPECTEST="-x -d"; fi | |
| if [ -n "${FITS}" ] ; then FITSTEST="-f ${FITS}"; fi | |
| smokevars="${XSPECTEST} ${FITSTEST} -v 3" | |
| # special case the macOS build as we currently do not | |
| # include DS9; as we know the XSPECVER/FITS sittings for | |
| # this it is hard-coded | |
| if [ "$RUNNER_OS" == "macOS" ]; then | |
| smokevars="-x -f ${FITS} -v 3" | |
| fi | |
| echo "** smoke test: ${smokevars}" | |
| source ${CONDA}/etc/profile.d/conda.sh | |
| conda activate build | |
| cd /home | |
| sherpa_smoke ${smokevars} | |
| - name: Internal check | |
| if: matrix.test-data == 'submodule' && matrix.install-type != 'develop' | |
| env: | |
| INSTALLTYPE: ${{ matrix.install-type }} | |
| run: | | |
| # This may not be relevant any more but left in as a | |
| # warning note. We could change this to say something | |
| # like the following, but with a way of pointing to | |
| # the test-data directory | |
| # | |
| # cd $HOME | |
| # pytest --pyargs sherpa --cov sherpa --cov-report xml:${{ github.workspace }}/coverage.xml | |
| # | |
| # but is it worth it? | |
| # | |
| echo "ERROR: submodule test can not be run with install-type=${INSTALLTYPE}" | |
| exit 1 | |
| - name: Submodule Tests | |
| if: matrix.test-data == 'submodule' | |
| env: | |
| INSTALLTYPE: ${{ matrix.install-type }} | |
| run: | | |
| if [ "$RUNNER_OS" == "macOS" ]; then | |
| # make sure pytext-xvfb can find Xvfb | |
| # Note that it looks like macOS does not install DS9 at the | |
| # moment, but leave this in | |
| export PATH="${PATH}:/opt/X11/bin" | |
| fi | |
| source ${CONDA}/etc/profile.d/conda.sh | |
| conda activate build | |
| conda install -yq pytest-cov | |
| pytest --pyargs sherpa --cov sherpa --cov-report xml:${{ github.workspace }}/coverage.xml | |
| - name: sherpa_test Tests | |
| if: matrix.test-data == 'package' || matrix.test-data == 'none' | |
| run: | | |
| source ${CONDA}/etc/profile.d/conda.sh | |
| conda activate build | |
| conda install -yq pytest-cov | |
| cd $HOME | |
| sherpa_test --cov sherpa --cov-report xml:${{ github.workspace }}/coverage.xml | |
| - name: upload coverage | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: ${{ github.workspace }}/coverage.xml | |
| verbose: true | |