detection of atomicity.h

[g-roma]

On OSX 10.8 compilation fails at atomic.h because it tries to find atomicity.h as <bits/atomicity.h>. It looks like it may be a problem with ENVIRONMENT_MAC_OS_X_VERSION_MIN_REQUIRED

[wackou]

works here, osx 10.8, clang 4.0...

What's your config / the output of "./waf -v" ?

[g-roma]

this is with clang 4.2, not sure about what are you asking for ... waf -v compiles in verbose mode.
In the end I get:
(...)/essentia/src/utils/atomic.h:81:14: fatal error: 'bits/atomicity.h' file not found
Changing 'bits' for 'ext' works fine

[wackou]

can you paste the last, say, 30 lines of the log output, please? Have no problem here, so I need to identify the problem with some context.

Also, can you show the result of which clang to see where it gets it? Do you also have a clang in your /usr/bin?

[g-roma]

yes clang is in /usr/bin
clang -v
Apple LLVM version 4.2 (clang-425.0.24) (based on LLVM 3.2svn)
Target: x86_64-apple-darwin12.4.0
Thread model: posix

And here goes all the output, with some markdown parsing by github :)

ccpn-42-207:essentia gerard$ ./waf configure --mode=release --with-python --with-cpptests --with-examples --with-vamp
Setting top to : /Users/gerard/dev/essentia/essentia
Setting out to : /Users/gerard/dev/essentia/essentia/buildw
→ configuring the project in /Users/gerard/dev/essentia/essentia
→ Building in release mode
Checking for 'g++' (c++ compiler) : clang++
Checking for 'gcc' (c compiler) : clang
Checking for program pkg-config : /usr/local/bin/pkg-config
Checking for 'libavcodec' : yes
Checking for 'libavformat' : yes
Checking for 'libavutil' : yes
Checking for 'libswresample' : not found
Checking for 'taglib' : yes
Checking for 'yaml-0.1' : yes
Checking for 'fftw3f' : yes
Checking for 'samplerate' : yes
Checking for program python : /Library/Frameworks/EPD64.framework/Versions/Current/bin/python
Checking for python version : (2, 7, 3, 'final', 0)
Checking for library python2.7 in LIBDIR : yes
Checking for program /Library/Frameworks/EPD64.framework/Versions/Current/bin/python-config,python2.7-config,python-config-2.7,python2.7m-config : /Library/Frameworks/EPD64.framework/Versions/Current/bin/python-config
Checking for header Python.h : yes

================================ CONFIGURATION SUMMARY ================================

• FFmpeg / libav detected!
  The following algorithms will be included: ['AudioLoader', 'MonoLoader', 'EqloudLoader', 'EasyLoader', 'MonoWriter', 'AudioWriter']
• FFmpeg install with swresample support seems to be missing.
  Will be using an embedded copy for doing audio conversion
• libsamplerate (SRC) detected!
  The following algorithms will be included: ['Resample']
• TagLib detected!
  The following algorithms will be included: ['MetadataReader']

'configure' finished successfully (1.137s)
ccpn-42-207:essentia gerard$ ./waf
Waf: Entering directory `/Users/gerard/dev/essentia/essentia/buildw'
→ building from /Users/gerard/dev/essentia/essentia
→ building from /Users/gerard/dev/essentia/essentia/src
Building all the algorithms
Ignoring the following algorithms: GaiaTransform
→ building from /Users/gerard/dev/essentia/essentia/src/examples
→ building from /Users/gerard/dev/essentia/essentia/src/python
[ 1/310] cxx: src/base/algorithm.cpp -> buildw/src/base/algorithm.cpp.1.o
[ 2/310] cxx: src/base/configurable.cpp -> buildw/src/base/configurable.cpp.1.o
[ 3/310] cxx: src/base/connector.cpp -> buildw/src/base/connector.cpp.1.o
[ 4/310] cxx: src/base/debugging.cpp -> buildw/src/base/debugging.cpp.1.o
[ 5/310] cxx: src/base/essentia.cpp -> buildw/src/base/essentia.cpp.1.o
[ 6/310] cxx: src/base/essentiautil.cpp -> buildw/src/base/essentiautil.cpp.1.o
[ 7/310] cxx: src/base/parameter.cpp -> buildw/src/base/parameter.cpp.1.o
[ 8/310] cxx: src/base/pool.cpp -> buildw/src/base/pool.cpp.1.o
[ 9/310] cxx: src/base/range.cpp -> buildw/src/base/range.cpp.1.o
[ 10/310] cxx: src/base/sinkbase.cpp -> buildw/src/base/sinkbase.cpp.1.o
[ 11/310] cxx: src/base/sourcebase.cpp -> buildw/src/base/sourcebase.cpp.1.o
[ 12/310] cxx: src/base/stringutil.cpp -> buildw/src/base/stringutil.cpp.1.o
[ 13/310] cxx: src/scheduler/network.cpp -> buildw/src/scheduler/network.cpp.1.o
[ 14/310] cxx: src/scheduler/networkparser.cpp -> buildw/src/scheduler/networkparser.cpp.1.o
[ 15/310] cxx: src/streaming/accumulatoralgorithm.cpp -> buildw/src/streaming/accumulatoralgorithm.cpp.1.o
[ 16/310] cxx: src/streaming/algorithms/devnull.cpp -> buildw/src/streaming/algorithms/devnull.cpp.1.o
[ 17/310] cxx: src/streaming/algorithms/poolstorage.cpp -> buildw/src/streaming/algorithms/poolstorage.cpp.1.o
[ 18/310] cxx: src/streaming/streamingalgorithm.cpp -> buildw/src/streaming/streamingalgorithm.cpp.1.o
[ 19/310] cxx: src/streaming/streamingalgorithmcomposite.cpp -> buildw/src/streaming/streamingalgorithmcomposite.cpp.1.o
[ 20/310] cxx: src/streaming/streamingalgorithmwrapper.cpp -> buildw/src/streaming/streamingalgorithmwrapper.cpp.1.o
[ 21/310] cxx: src/utils/asciidag.cpp -> buildw/src/utils/asciidag.cpp.1.o
[ 22/310] cxx: src/utils/asciidagparser.cpp -> buildw/src/utils/asciidagparser.cpp.1.o
[ 23/310] cxx: src/utils/audiocontext.cpp -> buildw/src/utils/audiocontext.cpp.1.o
[ 24/310] cxx: src/utils/splineutil.cpp -> buildw/src/utils/splineutil.cpp.1.o
In file included from ../src/utils/audiocontext.cpp:20:
In file included from /Users/gerard/dev/essentia/essentia/src/utils/audiocontext.h:26:
In file included from /Users/gerard/dev/essentia/essentia/src/utils/ffmpegapi.h:48:
/usr/local/Cellar/ffmpeg/0.8/include/libavcodec/avcodec.h:525:1: warning: attribute 'deprecated' is ignored, place it after "enum" to apply attribute to type declaration [-Wignored-attributes]
attribute_deprecated enum AVLPCType {
^
/usr/local/Cellar/ffmpeg/0.8/include/libavutil/attributes.h:85:49: note: expanded from macro 'attribute_deprecated'

define attribute_deprecated attribute((deprecated))

                                            ^

../src/utils/audiocontext.cpp:66:46: warning: implicit conversion of NULL constant to 'int' [-Wnull-conversion]
_avStream = avformat_new_stream(_demuxCtx, NULL);
~~~~~~~~~~~~~~~~~~~ ^~~~
0
2 warnings generated.
[ 25/310] cxx: src/utils/yamlast.cpp -> buildw/src/utils/yamlast.cpp.1.o
[ 26/310] cxx: src/algorithms/essentia_algorithms_reg.cpp -> buildw/src/algorithms/essentia_algorithms_reg.cpp.1.o
[ 27/310] cxx: src/algorithms/extractor/rhythmextractor2013.cpp -> buildw/src/algorithms/extractor/rhythmextractor2013.cpp.1.o
[ 28/310] cxx: src/algorithms/rhythm/rhythmdescriptors.cpp -> buildw/src/algorithms/rhythm/rhythmdescriptors.cpp.1.o
[ 29/310] cxx: src/algorithms/spectral/hpcp.cpp -> buildw/src/algorithms/spectral/hpcp.cpp.1.o
[ 30/310] cxx: src/algorithms/io/fileoutputproxy.cpp -> buildw/src/algorithms/io/fileoutputproxy.cpp.1.o
[ 31/310] cxx: src/algorithms/sfx/maxtototal.cpp -> buildw/src/algorithms/sfx/maxtototal.cpp.1.o
[ 32/310] cxx: src/algorithms/tonal/harmonicpeaks.cpp -> buildw/src/algorithms/tonal/harmonicpeaks.cpp.1.o
[ 33/310] cxx: src/algorithms/spectral/maxmagfreq.cpp -> buildw/src/algorithms/spectral/maxmagfreq.cpp.1.o
[ 34/310] cxx: src/algorithms/spectral/strongpeak.cpp -> buildw/src/algorithms/spectral/strongpeak.cpp.1.o
[ 35/310] cxx: src/algorithms/spectral/spectralwhitening.cpp -> buildw/src/algorithms/spectral/spectralwhitening.cpp.1.o
[ 36/310] cxx: src/algorithms/tonal/tonicindianartmusic.cpp -> buildw/src/algorithms/tonal/tonicindianartmusic.cpp.1.o
[ 37/310] cxx: src/algorithms/temporal/larm.cpp -> buildw/src/algorithms/temporal/larm.cpp.1.o
[ 38/310] cxx: src/algorithms/standard/stereodemuxer.cpp -> buildw/src/algorithms/standard/stereodemuxer.cpp.1.o
[ 39/310] cxx: src/algorithms/tonal/inharmonicity.cpp -> buildw/src/algorithms/tonal/inharmonicity.cpp.1.o
[ 40/310] cxx: src/algorithms/stats/instantpower.cpp -> buildw/src/algorithms/stats/instantpower.cpp.1.o
[ 41/310] cxx: src/algorithms/io/monoloader.cpp -> buildw/src/algorithms/io/monoloader.cpp.1.o
[ 42/310] cxx: src/algorithms/extractor/tuningfrequencyextractor.cpp -> buildw/src/algorithms/extractor/tuningfrequencyextractor.cpp.1.o
[ 43/310] cxx: src/algorithms/standard/noiseadder.cpp -> buildw/src/algorithms/standard/noiseadder.cpp.1.o
[ 44/310] cxx: src/algorithms/io/monowriter.cpp -> buildw/src/algorithms/io/monowriter.cpp.1.o
[ 45/310] cxx: src/algorithms/io/ringbufferoutput.cpp -> buildw/src/algorithms/io/ringbufferoutput.cpp.1.o
In file included from ../src/algorithms/io/ringbufferoutput.cpp:21:
In file included from /Users/gerard/dev/essentia/essentia/src/utils/ringbufferimpl.h:23:
/Users/gerard/dev/essentia/essentia/src/utils/atomic.h:81:14: fatal error: 'bits/atomicity.h' file not found

include <bits/atomicity.h>

         ^

1 error generated.
In file included from ../src/algorithms/io/monowriter.cpp:20:
In file included from ../src/algorithms/io/monowriter.h:24:
In file included from /Users/gerard/dev/essentia/essentia/src/utils/audiocontext.h:26:
In file included from /Users/gerard/dev/essentia/essentia/src/utils/ffmpegapi.h:48:
/usr/local/Cellar/ffmpeg/0.8/include/libavcodec/avcodec.h:525:1: warning: attribute 'deprecated' is ignored, place it after "enum" to apply attribute to type declaration [-Wignored-attributes]
attribute_deprecated enum AVLPCType {
^
/usr/local/Cellar/ffmpeg/0.8/include/libavutil/attributes.h:85:49: note: expanded from macro 'attribute_deprecated'

define attribute_deprecated attribute((deprecated))

                                            ^

1 warning generated.
In file included from ../src/algorithms/essentia_algorithms_reg.cpp:19:
In file included from /Users/gerard/dev/essentia/essentia/src/algorithms/io/monowriter.h:24:
In file included from /Users/gerard/dev/essentia/essentia/src/utils/audiocontext.h:26:
In file included from /Users/gerard/dev/essentia/essentia/src/utils/ffmpegapi.h:48:
/usr/local/Cellar/ffmpeg/0.8/include/libavcodec/avcodec.h:525:1: warning: attribute 'deprecated' is ignored, place it after "enum" to apply attribute to type declaration [-Wignored-attributes]
attribute_deprecated enum AVLPCType {
^
/usr/local/Cellar/ffmpeg/0.8/include/libavutil/attributes.h:85:49: note: expanded from macro 'attribute_deprecated'

define attribute_deprecated attribute((deprecated))

                                            ^

1 warning generated.
Waf: Leaving directory `/Users/gerard/dev/essentia/essentia/buildw'
Build failed
-> task in 'essentia' failed (exit status 1):
{task 4316533520: cxx ringbufferoutput.cpp -> ringbufferoutput.cpp.1.o}
['clang++', '-pipe', '-Wall', '-O2', '-fPIC', '-Wno-gnu', '-I/Users/gerard/dev/essentia/essentia/buildw/src', '-I/Users/gerard/dev/essentia/essentia/src', '-I/Users/gerard/dev/essentia/essentia/buildw/src/base', '-I/Users/gerard/dev/essentia/essentia/src/base', '-I/Users/gerard/dev/essentia/essentia/buildw/src/scheduler', '-I/Users/gerard/dev/essentia/essentia/src/scheduler', '-I/Users/gerard/dev/essentia/essentia/buildw/src/streaming', '-I/Users/gerard/dev/essentia/essentia/src/streaming', '-I/Users/gerard/dev/essentia/essentia/buildw/src/streaming/algorithms', '-I/Users/gerard/dev/essentia/essentia/src/streaming/algorithms', '-I/Users/gerard/dev/essentia/essentia/buildw/src/utils', '-I/Users/gerard/dev/essentia/essentia/src/utils', '-I/Users/gerard/dev/essentia/essentia/buildw/src/3rdparty', '-I/Users/gerard/dev/essentia/essentia/src/3rdparty', '-I/Users/gerard/dev/essentia/essentia/buildw/src/3rdparty/vamp-plugin-sdk-2.4', '-I/Users/gerard/dev/essentia/essentia/src/3rdparty/vamp-plugin-sdk-2.4', '-I/usr/local/Cellar/fftw/3.3.3/include', '-I/usr/local/Cellar/ffmpeg/0.8/include', '-I/usr/local/Cellar/libsamplerate/0.1.8/include', '-I/usr/local/Cellar/taglib/1.8/include/taglib', '-DGTEST_HAS_TR1_TUPLE=0', '-DHAVE_AVCODEC=1', '-DHAVE_AVFORMAT=1', '-DHAVE_AVUTIL=1', '-DHAVE_TAGLIB=1', '-D__STDC_CONSTANT_MACROS', '-DHAVE_YAML=1', '-DHAVE_FFTW=1', '-DHAVE_SAMPLERATE=1', '-DPYTHONDIR="/usr/local/lib/python2.7/site-packages"', '-DPYTHONARCHDIR="/usr/local/lib/python2.7/site-packages"', '-DHAVE_PYTHON_H=1', '../src/algorithms/io/ringbufferoutput.cpp', '-c', '-o', 'src/algorithms/io/ringbufferoutput.cpp.1.o']

[wackou]

OK, should be fixed now