chore: rename (#64)

MODFLOW-ORG · Mar 3, 2025 · a6c908d · a6c908d
1 parent d129129
commit a6c908d
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Showing 9 changed files with 32 additions and 29 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -109,7 +109,7 @@ jobs:
         run: |
           python -m pip install --upgrade pip
           pip install git+https://[email protected]/Deltares/xmipy@develop
-          pip install git+https://[email protected]/MODFLOW-USGS/modflow-devtools@develop
+          pip install git+https://[email protected]/MODFLOW-ORG/modflow-devtools@develop
           pip install .[test]
 
       - name: Install modflow executables
@@ -150,7 +150,7 @@ jobs:
         run: |
           python -m pip install --upgrade pip
           pip install git+https://[email protected]/Deltares/xmipy@develop
-          pip install git+https://[email protected]/MODFLOW-USGS/modflow-devtools@develop
+          pip install git+https://[email protected]/MODFLOW-ORG/modflow-devtools@develop
           pip install .[test]
 
       - name: Install modflow executables
@@ -184,7 +184,7 @@ jobs:
       - name: Checkout mf6-examples
         uses: actions/checkout@v4
         with:
-          repository: MODFLOW-USGS/modflow6-examples
+          repository: MODFLOW-ORG/modflow6-examples
           path: modflow6-examples
 
       - name: Setup Python
@@ -198,7 +198,7 @@ jobs:
         run: |
           python -m pip install --upgrade pip
           pip install git+https://[email protected]/Deltares/xmipy@develop
-          pip install git+https://[email protected]/MODFLOW-USGS/modflow-devtools@develop
+          pip install git+https://[email protected]/MODFLOW-ORG/modflow-devtools@develop
           pip install git+https://[email protected]/modflowpy/flopy@develop
           pip install .[test]
 

diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
@@ -167,7 +167,7 @@ jobs:
   publish:
     name: Publish package
     # runs only after release is published (manually promoted from draft)
-    if: github.event_name == 'release' && github.repository_owner == 'MODFLOW-USGS'
+    if: github.event_name == 'release' && github.repository_owner == 'MODFLOW-ORG'
     runs-on: ubuntu-22.04
     permissions:
       contents: write

diff --git a/.gitignore b/.gitignore
@@ -134,4 +134,7 @@ dmypy.json
 # library files
 **.dll
 **.so
-**.dylib
+**.dylib
+
+# uv lockfile
+uv.lock
diff --git a/CITATION.cff b/CITATION.cff
@@ -7,7 +7,7 @@ version: 0.3.0.dev0
 date-released: '2023-04-19'
 abstract: An extension to xmipy for the MODFLOW API.
 repository-artifact: https://pypi.org/project/modflowapi
-repository-code: https://github.com/MODFLOW-USGS/modflowapi
+repository-code: https://github.com/MODFLOW-ORG/modflowapi
 license: CC0-1.0
 authors:
 - family-names: Hughes

diff --git a/HISTORY.md b/HISTORY.md
@@ -3,19 +3,19 @@
 
 #### Refactoring
 
-* [refactor(rhs, hcof)](https://github.com/MODFLOW-USGS/modflowapi/commit/c0f681c5b7525388ead4df8c6363c1b4514d6de6): Updates to allow setting values when rhs and hcof have not yet had pointers set.. Committed by Joshua Larsen on 2023-04-28.
-* [refactor(Quickstart.ipynb)](https://github.com/MODFLOW-USGS/modflowapi/commit/3b6675aa687f5af01813abfdb143c7ddd4343646): Fix error in callback_function. Committed by Joshua Larsen on 2023-07-17.
-* [refactor(rhs, hcof)](https://github.com/MODFLOW-USGS/modflowapi/commit/ce4e50286d66da51c6b05f0de29c7c646344f6ce): Allow setting rhs and hcof when pointers have not been previously set. Committed by Joshua Larsen on 2023-07-17.
-* [refactor](https://github.com/MODFLOW-USGS/modflowapi/commit/e693282611d5863bafeece362230a4aadd02311f): Update libmf6 path handling (#27). Committed by w-bonelli on 2023-08-03.
-* [refactor(_ptr_to_recarray)](https://github.com/MODFLOW-USGS/modflowapi/commit/5a631592f2da57bf1564c263e9602c46e5a5a50c): Slice pointers prior to setting data to recarray. Committed by Joshua Larsen on 2023-08-08.
-* [refactor(_ptr_to_recarray)](https://github.com/MODFLOW-USGS/modflowapi/commit/959fe31abda263a52d01262af7dc4c2a878eadb5): Slice pointers prior to setting data to recarray. Committed by Joshua Larsen on 2023-08-08.
-* [refactor(extensions)](https://github.com/MODFLOW-USGS/modflowapi/commit/c97339d06e7386055e486f6354825ec15cea4638): Add support for IDM changes. Committed by Joshua Larsen on 2023-12-21.
-* [refactor(extensions)](https://github.com/MODFLOW-USGS/modflowapi/commit/de0aff9c21d5d925235f306fd2b3d148c3281efa): Add support for IDM changes. Committed by Joshua Larsen on 2023-12-21.
+* [refactor(rhs, hcof)](https://github.com/MODFLOW-ORG/modflowapi/commit/c0f681c5b7525388ead4df8c6363c1b4514d6de6): Updates to allow setting values when rhs and hcof have not yet had pointers set.. Committed by Joshua Larsen on 2023-04-28.
+* [refactor(Quickstart.ipynb)](https://github.com/MODFLOW-ORG/modflowapi/commit/3b6675aa687f5af01813abfdb143c7ddd4343646): Fix error in callback_function. Committed by Joshua Larsen on 2023-07-17.
+* [refactor(rhs, hcof)](https://github.com/MODFLOW-ORG/modflowapi/commit/ce4e50286d66da51c6b05f0de29c7c646344f6ce): Allow setting rhs and hcof when pointers have not been previously set. Committed by Joshua Larsen on 2023-07-17.
+* [refactor](https://github.com/MODFLOW-ORG/modflowapi/commit/e693282611d5863bafeece362230a4aadd02311f): Update libmf6 path handling (#27). Committed by w-bonelli on 2023-08-03.
+* [refactor(_ptr_to_recarray)](https://github.com/MODFLOW-ORG/modflowapi/commit/5a631592f2da57bf1564c263e9602c46e5a5a50c): Slice pointers prior to setting data to recarray. Committed by Joshua Larsen on 2023-08-08.
+* [refactor(_ptr_to_recarray)](https://github.com/MODFLOW-ORG/modflowapi/commit/959fe31abda263a52d01262af7dc4c2a878eadb5): Slice pointers prior to setting data to recarray. Committed by Joshua Larsen on 2023-08-08.
+* [refactor(extensions)](https://github.com/MODFLOW-ORG/modflowapi/commit/c97339d06e7386055e486f6354825ec15cea4638): Add support for IDM changes. Committed by Joshua Larsen on 2023-12-21.
+* [refactor(extensions)](https://github.com/MODFLOW-ORG/modflowapi/commit/de0aff9c21d5d925235f306fd2b3d148c3281efa): Add support for IDM changes. Committed by Joshua Larsen on 2023-12-21.
 
 ### Version 0.1.0
 
-* Fix typo in README (https://github.com/MODFLOW-USGS/modflowapi/pull/4)
-* modflowapi interface (https://github.com/MODFLOW-USGS/modflowapi/pull/8)
+* Fix typo in README (https://github.com/MODFLOW-ORG/modflowapi/pull/4)
+* modflowapi interface (https://github.com/MODFLOW-ORG/modflowapi/pull/8)
 * update package: manual variable address assembly updated to use xmipy get_variable_addr()
 * update additional manual variable address assembly statements
 * Refactor code and added functionality:
@@ -43,19 +43,19 @@
 * ArrayPointer: trap for arrays that are not adjusted by reduced node numbers (ex. idomain)
 * update setup.cfg
 * try reformatting the xmipy installation instructions
-* fix(get value): fixed error handling when modflowapi fails to get a pointer to a value from the API (https://github.com/MODFLOW-USGS/modflowapi/pull/9)
+* fix(get value): fixed error handling when modflowapi fails to get a pointer to a value from the API (https://github.com/MODFLOW-ORG/modflowapi/pull/9)
 Co-authored-by: scottrp <[email protected]>
 * update(rhs, hcof, AdvancedInput): bug fixes for setting variable values for advanced inputs
 * update rhs and hcof to copy values to pointer instead of overwriting the pointer
 * add a check for AdvancedInput variables that do not have pointer support in xmipy
 * update setting routine for AdvancedInput
-* refactor(EOL): change CRLF to LF line endings for source files (https://github.com/MODFLOW-USGS/modflowapi/pull/12)
-* Use pyproject.toml for project metadata, add citation info (https://github.com/MODFLOW-USGS/modflowapi/pull/11)
-* add(test_rhs_hcof_advanced): add additional test  (https://github.com/MODFLOW-USGS/modflowapi/pull/13)
+* refactor(EOL): change CRLF to LF line endings for source files (https://github.com/MODFLOW-ORG/modflowapi/pull/12)
+* Use pyproject.toml for project metadata, add citation info (https://github.com/MODFLOW-ORG/modflowapi/pull/11)
+* add(test_rhs_hcof_advanced): add additional test  (https://github.com/MODFLOW-ORG/modflowapi/pull/13)
 * added test for getting and setting rhs, hcof, and advanced variable values
 * update project to use unix line separators
 * use np.testing.assert_allclose() instead of AssertionError
-* Add missing RIV support to modflowapi (https://github.com/MODFLOW-USGS/modflowapi/pull/16)
+* Add missing RIV support to modflowapi (https://github.com/MODFLOW-ORG/modflowapi/pull/16)
 * add(test_rhs_hcof_advanced): add additional test
 * added test for getting and setting rhs, hcof, and advanced variable values
 * update project to use unix line separators

diff --git a/README.md b/README.md
@@ -1,8 +1,8 @@
 # modflowapi
 
-[![CI](https://github.com/MODFLOW-USGS/modflowapi/actions/workflows/ci.yml/badge.svg)](https://github.com/MODFLOW-USGS/modflowapi/actions/workflows/ci.yml)
-[![GitHub contributors](https://img.shields.io/github/contributors/MODFLOW-USGS/modflowapi)](https://img.shields.io/github/contributors/MODFLOW-USGS/modflowapi)
-[![GitHub tag](https://img.shields.io/github/tag/MODFLOW-USGS/modflowapi.svg)](https://github.com/MODFLOW-USGS/modflowapi/tags/latest)
+[![CI](https://github.com/MODFLOW-ORG/modflowapi/actions/workflows/ci.yml/badge.svg)](https://github.com/MODFLOW-ORG/modflowapi/actions/workflows/ci.yml)
+[![GitHub contributors](https://img.shields.io/github/contributors/MODFLOW-ORG/modflowapi)](https://img.shields.io/github/contributors/MODFLOW-ORG/modflowapi)
+[![GitHub tag](https://img.shields.io/github/tag/MODFLOW-ORG/modflowapi.svg)](https://github.com/MODFLOW-ORG/modflowapi/tags/latest)
 
 [![PyPI License](https://img.shields.io/pypi/l/modflowapi)](https://pypi.python.org/pypi/modflowapi)
 [![PyPI Status](https://img.shields.io/pypi/status/modflowapi.png)](https://pypi.python.org/pypi/modflowapi)

diff --git a/autotest/conftest.py b/autotest/conftest.py
@@ -24,7 +24,7 @@ def get_mf6_examples_path() -> Path:
         if not __mf6_examples_path.is_dir():
             __mf6_examples_path.mkdir(exist_ok=True)
             download_and_unzip(
-                url="https://github.com/MODFLOW-USGS/modflow6-examples/releases/download/current/modflow6-examples.zip",
+                url="https://github.com/MODFLOW-ORG/modflow6-examples/releases/download/current/modflow6-examples.zip",
                 path=__mf6_examples_path,
                 verbose=True,
             )
@@ -46,7 +46,7 @@ def is_nested(namfile) -> bool:
 
 def pytest_generate_tests(metafunc):
     # examples to skip:
-    #   - ex-gwtgwt-mt3dms-p10: https://github.com/MODFLOW-USGS/modflow6/pull/1008
+    #   - ex-gwtgwt-mt3dms-p10: https://github.com/MODFLOW-ORG/modflow6/pull/1008
     option_value = metafunc.config.option.mf6_examples_path
     t = metafunc.fixturenames
     if "mf6_example_namfiles" in metafunc.fixturenames and option_value is not None:

diff --git a/cliff.toml b/cliff.toml
@@ -10,7 +10,7 @@ body = """
 {% for group, commits in commits | group_by(attribute="group") %}
     #### {{ group | upper_first }}
     {% for commit in commits %}
-        * [{{ commit.group }}{% if commit.scope %}({{ commit.scope }}){% endif %}](https://github.com/MODFLOW-USGS/modflowapi/commit/{{ commit.id }}): {% if commit.breaking %}[**breaking**] {% endif %}{{ commit.message | upper_first }}. Committed by {{ commit.author.name }} on {{ commit.author.timestamp | date(format="%Y-%m-%d") }}.\
+        * [{{ commit.group }}{% if commit.scope %}({{ commit.scope }}){% endif %}](https://github.com/MODFLOW-ORG/modflowapi/commit/{{ commit.id }}): {% if commit.breaking %}[**breaking**] {% endif %}{{ commit.message | upper_first }}. Committed by {{ commit.author.name }} on {{ commit.author.timestamp | date(format="%Y-%m-%d") }}.\
     {% endfor %}
 {% endfor %}\n
 """

diff --git a/pyproject.toml b/pyproject.toml
@@ -60,7 +60,7 @@ lint = [
 ]
 
 [project.urls]
-Repository = "https://github.com/MODFLOW-USGS/modflowapi"
+Repository = "https://github.com/MODFLOW-ORG/modflowapi"
 Publication = "https://doi.org/10.1016/j.envsoft.2021.105257"
 
 [tool.hatch.build.targets.sdist]