chore: drop py3.9, fix conftest.py, use uv in ci #907
Workflow file for this run
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| name: modflowapi continuous integration | |
| on: | |
| schedule: | |
| - cron: '0 8 * * *' # run at 8 AM UTC (12 am PST) | |
| push: | |
| branches: | |
| - main | |
| - develop | |
| - 'release*' | |
| pull_request: | |
| branches: [main, develop] | |
| jobs: | |
| std_setup: | |
| name: standard installation | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.x | |
| - name: Base installation | |
| run: pip install -e . | |
| - name: Print version | |
| run: python -c "import modflowapi; print(modflowapi.__version__)" | |
| lint: | |
| name: lint | |
| runs-on: ubuntu-latest | |
| if: github.event_name != 'schedule' | |
| strategy: | |
| fail-fast: false | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| # Standard python fails on Windows without GDAL installation. Using | |
| # standard python here since only linting on linux. | |
| # Use standard bash shell with standard python | |
| - name: Setup uv | |
| uses: astral-sh/setup-uv@v5 | |
| with: | |
| cache-dependency-glob: "**/pyproject.toml" | |
| - name: Install | |
| run: uv sync --group lint | |
| - name: Lint | |
| run: uvx ruff check . | |
| - name: Format | |
| run: uvx ruff format . --check | |
| - name: Spelling | |
| run: uvx codespell | |
| autotest_extensions: | |
| name: modflowapi extensions autotests | |
| needs: lint | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-latest, macos-latest, windows-latest ] | |
| python-version: [ "3.10", "3.11", "3.12", "3.13" ] | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Setup uv | |
| uses: astral-sh/setup-uv@v5 | |
| with: | |
| cache-dependency-glob: "**/pyproject.toml" | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install | |
| run: uv sync --group test | |
| - name: Install Python dependencies | |
| run: | | |
| uv pip install git+https://[email protected]/Deltares/xmipy@develop | |
| uv pip install git+https://[email protected]/MODFLOW-ORG/modflow-devtools@develop | |
| - name: Install modflow executables | |
| uses: modflowpy/install-modflow-action@v1 | |
| with: | |
| path: ${{ github.workspace }}/autotest | |
| repo: modflow6-nightly-build | |
| - name: Run autotests | |
| working-directory: ./autotest | |
| shell: bash -l {0} | |
| run: uv run pytest -v -n auto -m "not mf6" | |
| autotest_preidm_extensions: | |
| name: modflowapi pre-idm extensions autotests | |
| needs: lint | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-latest, macos-13, windows-latest ] | |
| python-version: [ "3.10", "3.11", "3.12", "3.13" ] | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v4 | |
| - name: Setup uv | |
| uses: astral-sh/setup-uv@v5 | |
| with: | |
| cache-dependency-glob: "**/pyproject.toml" | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install | |
| run: uv sync --group test | |
| - name: Install Python dependencies | |
| run: | | |
| uv pip install git+https://[email protected]/Deltares/xmipy@develop | |
| uv pip install git+https://[email protected]/MODFLOW-ORG/modflow-devtools@develop | |
| - name: Install modflow executables | |
| uses: modflowpy/install-modflow-action@v1 | |
| with: | |
| path: ${{ github.workspace }}/autotest | |
| repo: executables | |
| tag: "14.0" | |
| - name: Run autotests | |
| working-directory: ./autotest | |
| shell: bash -l {0} | |
| run: pytest -v -n auto -m "not mf6" | |
| autotest_mf6_examples: | |
| name: modflowapi mf6 examples autotests | |
| needs: lint | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-latest, macos-latest, windows-latest ] | |
| python-version: [ "3.10", "3.11", "3.12", "3.13" ] | |
| defaults: | |
| run: | |
| shell: bash | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| - name: Checkout mf6-examples | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: MODFLOW-ORG/modflow6-examples | |
| path: modflow6-examples | |
| - name: Setup uv | |
| uses: astral-sh/setup-uv@v5 | |
| with: | |
| cache-dependency-glob: "**/pyproject.toml" | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install | |
| run: uv sync --group test | |
| - name: Install Python dependencies | |
| run: | | |
| uv pip install git+https://[email protected]/Deltares/xmipy@develop | |
| uv pip install git+https://[email protected]/MODFLOW-ORG/modflow-devtools@develop | |
| uv pip install git+https://[email protected]/modflowpy/flopy@develop | |
| - name: update flopy for mf6-examples | |
| run: uv run python -m flopy.mf6.utils.generate_classes --ref develop --no-backup | |
| - name: Install modflow6 for modflow6-examples | |
| uses: modflowpy/install-modflow-action@v1 | |
| with: | |
| path: ${{ github.workspace }}/modflow6-examples/autotest | |
| - name: Build mf6-examples | |
| working-directory: modflow6-examples/autotest | |
| run: | | |
| uv run pytest -v -n=auto --init test_scripts.py -k "not synthetic-valley" | |
| - name: Install modflow6 nightly build | |
| uses: modflowpy/install-modflow-action@v1 | |
| with: | |
| path: ${{ github.workspace }}/autotest | |
| repo: modflow6-nightly-build | |
| - name: Run autotests | |
| working-directory: ./autotest | |
| shell: bash -l {0} | |
| run: uv run pytest -v -n=auto test_mf6_examples.py --mf6-examples-path=../modflow6-examples/examples |