Merge branch 'main' of github.com:MOCOS-COVID19/covid19-forecast-hub-…

…europe into main

README.md

@@ -169,15 +169,15 @@ Data:
 > Alexander Ullrich, Graham Gibson, Evan L Ray, Nicholas G Reich, Daniel
 > Sheldon, Yijin Wang, Nutcha Wattanachit, Lijing Wang, Jan Trnka,
 > Guillaume Obozinski, … Sebastian Funk. (2023). European Covid-19
-> Forecast Hub (v2023.04.20) \[Data set\]. Zenodo.
-> <https://doi.org/10.5281/zenodo.7848967>
+> Forecast Hub (v2023.04.27) \[Data set\]. Zenodo.
+> <https://doi.org/10.5281/zenodo.7870770>
 
 <details>
 
 <summary>Bibtex</summary>
 
 ``` bibtex
-@dataset{katharine_sherratt_2023_7848967,
+@dataset{katharine_sherratt_2023_7870770,
   author       = {Katharine Sherratt and
                   Hugo Gruson and
                   Helen Johnson and
@@ -304,9 +304,9 @@ Data:
   month        = apr,
   year         = 2023,
   publisher    = {Zenodo},
-  version      = {v2023.04.20},
-  doi          = {10.5281/zenodo.7848967},
-  url          = {https://doi.org/10.5281/zenodo.7848967}
+  version      = {v2023.04.27},
+  doi          = {10.5281/zenodo.7870770},
+  url          = {https://doi.org/10.5281/zenodo.7870770}
 }
 ```
 

code/ensemble/EuroCOVIDhub/method-by-date.csv

@@ -110,3 +110,4 @@ forecast_date,method
 2023-04-10,median
 2023-04-17,median
 2023-04-24,median
+2023-05-01,median

code/validation/check_truth.txt

@@ -1032,3 +1032,157 @@ Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-
 
 - The following locations are missing: ['Belgium', 'Cyprus', 'Czechia', 'Denmark', 'Estonia', 'France', 'Germany', 'Greece', 'Hungary', 'Iceland', 'Ireland', 'Italy', 'Latvia', 'Luxembourg', 'Malta', 'Slovakia', 'Slovenia'].
 
+Latest check of truth data: 2023-04-26
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Cases.csv' at 2023-04-08:
+
+- The following locations are missing: ['Austria', 'Belgium', 'Croatia', 'Cyprus', 'Denmark', 'Finland', 'Germany', 'Iceland', 'Italy', 'Lithuania', 'Netherlands', 'Portugal', 'Spain'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Deaths.csv' at 2023-04-08:
+
+- The following locations are missing: ['Austria', 'Belgium', 'Croatia', 'Cyprus', 'Czechia', 'Denmark', 'Finland', 'Germany', 'Greece', 'Hungary', 'Ireland', 'Italy', 'Liechtenstein', 'Lithuania', 'Luxembourg', 'Portugal', 'Slovakia', 'Slovenia', 'Spain', 'Sweden'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truth_OWID-Incident Hospitalizations.csv' at 2023-04-22:
+
+- The following locations are missing: ['Belgium', 'Cyprus', 'Denmark', 'Estonia', 'France', 'Greece', 'Hungary', 'Iceland', 'Ireland', 'Italy', 'Latvia', 'Luxembourg', 'Malta', 'Slovakia', 'Slovenia'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truncated_OWID-Incident Hospitalizations.csv' at 2023-04-22:
+
+- The following locations are missing: ['Belgium', 'Cyprus', 'Czechia', 'Denmark', 'Estonia', 'France', 'Germany', 'Greece', 'Hungary', 'Iceland', 'Ireland', 'Italy', 'Latvia', 'Luxembourg', 'Malta', 'Slovakia', 'Slovenia'].
+
+Latest check of truth data: 2023-04-27
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Cases.csv' at 2023-04-08:
+
+- The following locations are missing: ['Austria', 'Belgium', 'Croatia', 'Cyprus', 'Denmark', 'Finland', 'Germany', 'Iceland', 'Italy', 'Lithuania', 'Netherlands', 'Portugal', 'Spain'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Deaths.csv' at 2023-04-08:
+
+- The following locations are missing: ['Austria', 'Belgium', 'Croatia', 'Cyprus', 'Czechia', 'Denmark', 'Finland', 'Germany', 'Greece', 'Hungary', 'Ireland', 'Italy', 'Liechtenstein', 'Lithuania', 'Luxembourg', 'Portugal', 'Slovakia', 'Slovenia', 'Spain', 'Sweden'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truncated_OWID-Incident Hospitalizations.csv' at 2023-04-22:
+
+- The following locations are missing: ['Belgium', 'Cyprus', 'Czechia', 'France', 'Germany', 'Hungary', 'Iceland', 'Ireland', 'Italy', 'Luxembourg', 'Slovakia', 'Slovenia'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truth_OWID-Incident Hospitalizations.csv' at 2023-04-22:
+
+- The following locations are missing: ['Belgium', 'Cyprus', 'France', 'Hungary', 'Iceland', 'Italy', 'Luxembourg', 'Slovenia'].
+
+Latest check of truth data: 2023-04-28
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Cases.csv' at 2023-04-08:
+
+- The following locations are missing: ['Austria', 'Belgium', 'Croatia', 'Cyprus', 'Denmark', 'Finland', 'Germany', 'Iceland', 'Italy', 'Lithuania', 'Netherlands', 'Portugal', 'Spain'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Deaths.csv' at 2023-04-08:
+
+- The following locations are missing: ['Austria', 'Belgium', 'Croatia', 'Cyprus', 'Czechia', 'Denmark', 'Finland', 'Germany', 'Greece', 'Hungary', 'Ireland', 'Italy', 'Liechtenstein', 'Lithuania', 'Luxembourg', 'Portugal', 'Slovakia', 'Slovenia', 'Spain', 'Sweden'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truncated_OWID-Incident Hospitalizations.csv' at 2023-04-29:
+
+- The following locations are missing: ['Belgium', 'Cyprus', 'Czechia', 'Denmark', 'France', 'Germany', 'Hungary', 'Ireland', 'Italy', 'Luxembourg', 'Netherlands', 'Slovakia', 'Slovenia', 'Spain'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truth_OWID-Incident Hospitalizations.csv' at 2023-04-29:
+
+- The following locations are missing: ['Belgium', 'Cyprus', 'Czechia', 'Denmark', 'France', 'Germany', 'Hungary', 'Italy', 'Luxembourg', 'Netherlands', 'Slovenia', 'Spain'].
+
+Latest check of truth data: 2023-04-29
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Cases.csv' at 2023-04-22:
+
+- The following locations are missing: ['Austria', 'Belgium', 'Croatia', 'Cyprus', 'Denmark', 'Finland', 'Germany', 'Iceland', 'Italy', 'Lithuania', 'Netherlands', 'Portugal', 'Spain'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Deaths.csv' at 2023-04-22:
+
+- The following locations are missing: ['Austria', 'Belgium', 'Croatia', 'Cyprus', 'Czechia', 'Denmark', 'Finland', 'Germany', 'Greece', 'Hungary', 'Ireland', 'Italy', 'Liechtenstein', 'Lithuania', 'Luxembourg', 'Portugal', 'Slovakia', 'Slovenia', 'Spain', 'Sweden'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truncated_OWID-Incident Hospitalizations.csv' at 2023-04-29:
+
+- The following locations are missing: ['Belgium', 'Cyprus', 'Czechia', 'Denmark', 'France', 'Germany', 'Hungary', 'Ireland', 'Italy', 'Luxembourg', 'Netherlands', 'Slovakia', 'Slovenia', 'Spain'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truth_OWID-Incident Hospitalizations.csv' at 2023-04-29:
+
+- The following locations are missing: ['Belgium', 'Cyprus', 'Czechia', 'Denmark', 'France', 'Hungary', 'Italy', 'Luxembourg', 'Netherlands', 'Slovenia', 'Spain'].
+
+Latest check of truth data: 2023-04-30
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Cases.csv' at 2023-04-22:
+
+- The following locations are missing: ['Austria', 'Belgium', 'Croatia', 'Cyprus', 'Denmark', 'Finland', 'Germany', 'Iceland', 'Italy', 'Netherlands', 'Portugal', 'Spain'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Deaths.csv' at 2023-04-22:
+
+- The following locations are missing: ['Austria', 'Belgium', 'Croatia', 'Cyprus', 'Czechia', 'Denmark', 'Finland', 'Germany', 'Greece', 'Hungary', 'Ireland', 'Italy', 'Liechtenstein', 'Luxembourg', 'Portugal', 'Slovakia', 'Slovenia', 'Spain', 'Sweden'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truncated_OWID-Incident Hospitalizations.csv' at 2023-04-29:
+
+- The following locations are missing: ['Belgium', 'Cyprus', 'Czechia', 'Denmark', 'France', 'Germany', 'Hungary', 'Ireland', 'Italy', 'Luxembourg', 'Netherlands', 'Slovakia', 'Slovenia', 'Spain'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truth_OWID-Incident Hospitalizations.csv' at 2023-04-29:
+
+- The following locations are missing: ['Belgium', 'Cyprus', 'Denmark', 'France', 'Hungary', 'Italy', 'Luxembourg', 'Netherlands', 'Slovenia', 'Spain'].
+
+Latest check of truth data: 2023-05-01
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Cases.csv' at 2023-04-22:
+
+- The following locations are missing: ['Austria', 'Belgium', 'Croatia', 'Cyprus', 'Denmark', 'Finland', 'Germany', 'Iceland', 'Italy', 'Netherlands', 'Portugal', 'Spain'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Deaths.csv' at 2023-04-22:
+
+- The following locations are missing: ['Austria', 'Belgium', 'Croatia', 'Cyprus', 'Czechia', 'Denmark', 'Finland', 'Germany', 'Greece', 'Hungary', 'Ireland', 'Italy', 'Liechtenstein', 'Luxembourg', 'Portugal', 'Slovakia', 'Slovenia', 'Spain', 'Sweden'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truncated_OWID-Incident Hospitalizations.csv' at 2023-04-29:
+
+- The following locations are missing: ['Belgium', 'Cyprus', 'Czechia', 'Denmark', 'France', 'Germany', 'Hungary', 'Ireland', 'Italy', 'Luxembourg', 'Netherlands', 'Slovakia', 'Slovenia', 'Spain'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truth_OWID-Incident Hospitalizations.csv' at 2023-04-29:
+
+- The following locations are missing: ['Belgium', 'Cyprus', 'Denmark', 'France', 'Hungary', 'Italy', 'Luxembourg', 'Netherlands', 'Slovenia', 'Spain'].
+
+Latest check of truth data: 2023-05-02
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Cases.csv' at 2023-04-22:
+
+- The following locations are missing: ['Austria', 'Belgium', 'Croatia', 'Cyprus', 'Denmark', 'Finland', 'Germany', 'Iceland', 'Italy', 'Netherlands', 'Portugal', 'Spain'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/ECDC/truncated_ECDC-Incident Deaths.csv' at 2023-04-22:
+
+- The following locations are missing: ['Austria', 'Belgium', 'Croatia', 'Cyprus', 'Czechia', 'Denmark', 'Finland', 'Germany', 'Greece', 'Hungary', 'Ireland', 'Italy', 'Liechtenstein', 'Luxembourg', 'Portugal', 'Slovakia', 'Slovenia', 'Spain', 'Sweden'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truncated_OWID-Incident Hospitalizations.csv' at 2023-04-29:
+
+- The following locations are missing: ['Belgium', 'Cyprus', 'Czechia', 'Denmark', 'France', 'Germany', 'Hungary', 'Ireland', 'Italy', 'Luxembourg', 'Netherlands', 'Slovakia', 'Slovenia', 'Spain'].
+
+WARNING
+Error(s) in '/home/runner/work/covid19-forecast-hub-europe/covid19-forecast-hub-europe/data-truth/OWID/truth_OWID-Incident Hospitalizations.csv' at 2023-04-29:
+
+- The following locations are missing: ['Belgium', 'Cyprus', 'Denmark', 'France', 'Hungary', 'Italy', 'Luxembourg', 'Netherlands', 'Slovenia', 'Spain'].
+