WPTO for Matlab (#61)

* wpto playground

* format changes

* upload temporary test script

* wpto extract with REST API

* fix directional wave spectrum bug

* upload hindcast example

* auto format time_index into datetime array

* add tests for hindcast

* remove temp file

* bug fix for available buoy data vs hindcast

* upload data

* moving test files into hindcast folder

* updating toolbox paths

* updating hindcast example

* Setup CI, v16.2, try to fix HDF5 issue, try fix outlined in Troubleshooting

* Setup CI, v16.3, try to fix HDF5 issue, try fix outlined in Troubleshooting

* Setup CI, v16.4, try to fix HDF5 issue, try fix outlined in Troubleshooting

* Setup CI, v16.5, try to fix HDF5 issue, try fix outlined in Troubleshooting

* Setup CI, v16.6, try to fix HDF5 issue, try fix outlined in Troubleshooting

* Setup CI, v16.7, list installed toolboxes and addons

* Setup CI, v17, uninstall all pre-installed toolboxes

* Setup CI, v17.1, uninstall all pre-installed toolboxes

* Setup CI, v17.2, toggle off all pre-installed toolboxes

* Setup CI, v17.3, toggle off all pre-installed toolboxes

* Setup CI, v17.4, toggle off all pre-installed toolboxes

* Setup CI, v17.5, toggle off all pre-installed toolboxes

* Setup CI, v17.6, toggle off all pre-installed toolboxes

* Setup CI, v17.7, toggle off all pre-installed toolboxes

* Setup CI, v17.8, toggle off all pre-installed toolboxes

* Setup CI, v17.9, toggle off all pre-installed toolboxes

* Setup CI, v17.10, list installed addons and toolboxes

* Setup CI, v17.11, start uninstalling toolboxes

* Setup CI, v17.12, start uninstalling toolboxes

* Setup CI, v17.13, start uninstalling toolboxes

* Setup CI, v17.14, start uninstalling toolboxes

* Setup CI, v17.15, start uninstalling toolboxes

* Setup CI, v17.16, start uninstalling toolboxes

* Setup CI, v17.17, start uninstalling toolboxes

* Setup CI, v17.18, start uninstalling toolboxes

* Setup CI, v17.19, start uninstalling toolboxes

* Setup CI, v17.20, start uninstalling toolboxes

* Setup CI, v17.21, start uninstalling toolboxes

* Setup CI, v17.22, start uninstalling toolboxes

* Setup CI, v17.23, start uninstalling toolboxes

* Setup CI, v17.24, start uninstalling toolboxes

* Setup CI, v17.25, start uninstalling toolboxes

* Setup CI, v17.26, start uninstalling toolboxes

* Setup CI, v17.27, start uninstalling toolboxes

* Setup CI, v17.28, start uninstalling toolboxes

* Setup CI, v17.29, start uninstalling toolboxes

* Setup CI, v17.30, start uninstalling toolboxes

* Setup CI, v17.31, start uninstalling toolboxes

* Setup CI, v17.32, start uninstalling toolboxes

* Setup CI, v17.33, start uninstalling toolboxes

* Setup CI, v17.34, start uninstalling toolboxes

* Setup CI, v17.35, start uninstalling toolboxes

* Setup CI, v18, simplify to most basic test

* Setup CI, v19, install mhkit toolbox

* Setup CI, v20, run a single test that uses mhkit

* Setup CI, v21, run a single different test that uses mhkit

* Setup CI, v21.1, run a single different test that uses mhkit

* Setup CI, v21.2, run a single different test that uses mhkit

* Add function to reload python in matlab after python code changes

* Fix paths to python usgs and noaa functions

* Update pierson_moskowitz_spectrum wrapper with additional Hs parameter

* Update create_spectra with additional Hs parameter

* Update tests fixing mostly broken relative file paths

Co-authored-by: rpauly18 <[email protected]>
Co-authored-by: Matthew Boyd <[email protected]>

.github/workflows/main.yml

@@ -36,28 +36,45 @@ jobs:
       - name: Set up MATLAB
         uses: matlab-actions/setup-matlab@v1
 
-      - name: Query Python version used by MATLAB
-        uses: matlab-actions/run-command@v1
-        with:
-            command: pyversion()
-
-      - name: Install MHKiT toolbox in MATLAB
-        uses: matlab-actions/run-command@v1
-        with:
-            command: matlab.addons.toolbox.installToolbox('mhkit.mltbx')
+#      - name: Query Python version used by MATLAB
+#        uses: matlab-actions/run-command@v1
+#        with:
+#            command: pyversion()
 
-      - name: Uninstall MHKiT, for fixing HDF5 issue
-        run: |
-            python -m pip uninstall mhkit -y
-
-      - name: Re-install MHKiT, for fixing HDF5 issue
-        run: |
-            python -m pip install mhkit
-
-      - name: Re-install MHKiT toolbox in MATLAB, for fixing HDF5 issue
+# This can cause segmentation violations
+#      - name: List installed MATLAB addons
+#        uses: matlab-actions/run-command@v1
+#        with:
+#            command: matlab.addons.installedAddons
+
+# This can cause segmentation violations
+#      - name: List installed MATLAB toolboxes
+#        uses: matlab-actions/run-command@v1
+#        with:
+#            command: matlab.addons.toolbox.installedToolboxes
+# alternative: command: ver
+
+#      - name: Toggle off all pre-installed toolboxes
+#        uses: matlab-actions/run-command@v1
+#        with:
+#            command: addpath('mhkit/utils'), uninstall_all_toolboxes
+#              
+#      - name: Uninstall h5py, for fixing HDF5 issue
+#        run: |
+#            python pip uninstall h5py -y
+#
+      - name: Install MHKiT toolbox in MATLAB
         uses: matlab-actions/run-command@v1
         with:
             command: matlab.addons.toolbox.installToolbox('mhkit.mltbx')
+#
+#      - name: Uninstall MHKiT, for fixing HDF5 issue
+#        run: |
+#            python -m pip uninstall mhkit -y
+#      
+#      - name: Re-install MHKiT, for fixing HDF5 issue
+#        run: |
+#            python -m pip install mhkit
 
 #      - name: Change execution mode to out-of-process
 #        uses: matlab-actions/run-command@v1

.gitignore

@@ -6,7 +6,6 @@ test.egg-info/*
 *.spec
 **/build
 **./dist/
-*.csv
 **/cache/
 **/static/
 .DS_Store

examples/data/wave/hindcast/hindcast_1hr_meta.csv

@@ -0,0 +1,3 @@
+water_depth,latitude,longitude,distance_to_shore,timezone,jurisdiction
+67.7445,44.567,-124.229,12353.165,-8,Federal
+191.8491,43.08,-124.72,22735.91,-8,Federal