Typers

bohra comes with the option to perform in silico serotyping for a subset of species, where high quality and/or ISO1589 accredited tools are available. These tools include

• lissero for L. monocytogenes (accredited)
• meningotype for N. meningiditis (accredited)
• ngmaster for N. gonorrhoeae (accredited)
• stype which implements sistr for S. enterica (accredited)
• ectyper for E. coli
• sonneityping for S. sonnei
• kleborate for Klebsiella sp
• emmtyperfor S. pyogenes (iGAS) (accredited)