Bugfix for values not in vocab

LinkedEarth · Jul 26, 2024 · 58241aa · 58241aa
1 parent 2d501f9
commit 58241aa
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Showing 3 changed files with 14 additions and 2 deletions.
diff --git a/pylipd/utils/legacy_utils.py b/pylipd/utils/legacy_utils.py
@@ -46,7 +46,8 @@ def extract(self, d, whichtables="meas", mode="paleo", time="age"):
             _pc = "chronData"
         _root["mode"] = _pc
         _root["time_id"] = time
-        _root["archiveType"] = d["archiveType"]
+        if "archiveType" in d:
+            _root["archiveType"] = d["archiveType"]
         try:
             # Build the root level data.
             # This will serve as the template for which column data will be added onto later.

diff --git a/pylipd/utils/lipd_to_rdf.py b/pylipd/utils/lipd_to_rdf.py
@@ -373,7 +373,6 @@ def _add_interpretation_rank(self, obj, objhash):
         if "rank" not in obj or type(obj["rank"]) != int:
             rank = obj["@index"] - 1
             obj["rank"] = rank
-        print(obj["@id"], obj["rank"])
         return [obj, objhash, []]
 
     def _wrap_uncertainty(self, obj, objhash) :

diff --git a/pylipd/utils/rdf_to_lipd.py b/pylipd/utils/rdf_to_lipd.py
@@ -507,6 +507,8 @@ def _set_archive_type_label(self, ds, parent = None) :
                 id = ds["hasArchiveType"]["@id"]
                 if id in RSYNONYMS:
                     ds["archiveType"] = RSYNONYMS[id]
+                else:
+                    ds["archiveType"] = ds["hasArchiveType"]["label"]
             del ds["hasArchiveType"]
         return ds
 
@@ -517,6 +519,8 @@ def _set_variable_name_from_standard_variable_label(self, var, parent = None) :
                 id = var["hasStandardVariable"]["@id"]
                 if id in RSYNONYMS:
                     var["variableName"] = RSYNONYMS[id]
+                else:
+                    var["variableName"] = var["hasStandardVariable"]["label"]
             del var["hasStandardVariable"]
         return var
 
@@ -527,6 +531,8 @@ def _set_units_label(self, var, parent = None) :
                 id = var["hasUnits"]["@id"]
                 if id in RSYNONYMS:
                     var["units"] = RSYNONYMS[id]
+                else:
+                    var["units"] = var["hasUnits"]["label"]
             del var["hasUnits"]
         return var
 
@@ -537,6 +543,8 @@ def _set_proxy_label(self, var, parent = None) :
                 id = var["hasProxy"]["@id"]
                 if id in RSYNONYMS:
                     var["proxy"] = RSYNONYMS[id]
+                else:
+                    var["proxy"] = var["hasProxy"]["label"]
             del var["hasProxy"]
         return var
 
@@ -547,6 +555,8 @@ def _set_proxy_general_label(self, var, parent = None) :
                 id = var["hasProxyGeneral"]["@id"]
                 if id in RSYNONYMS:
                     var["proxyGeneral"] = RSYNONYMS[id]
+                else:
+                    var["proxyGeneral"] = var["hasProxyGeneral"]["label"]
             del var["hasProxyGeneral"]
         return var
 
@@ -564,6 +574,8 @@ def _set_seasonality_labels(self, interp, parent = None) :
                     nid = convs[pid]
                     if id in RSYNONYMS:
                         interp[nid] = RSYNONYMS[id]
+                    else:
+                        interp[nid] = interp[pid]["label"]
                 del interp[pid]
         return interp