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UCLN ParametricDistribution for relaxed clock #488

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walterxie opened this issue Jun 5, 2024 · 0 comments
Closed

UCLN ParametricDistribution for relaxed clock #488

walterxie opened this issue Jun 5, 2024 · 0 comments
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enhancement New feature or request

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@walterxie
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walterxie commented Jun 5, 2024 •
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The uncorrelated lognormal (UCLN) ParametricDistribution for relaxed clock branch rates
@walterxie walterxie added the enhancement New feature or request label Jun 5, 2024
@walterxie walterxie pinned this issue Jun 5, 2024
@walterxie walterxie changed the title UCLN function for relaxed clock UCLN ParametricDistribution for relaxed clock Jun 5, 2024
@walterxie walterxie unpinned this issue Oct 2, 2024
walterxie added a commit that referenced this issue Oct 3, 2024
@walterxie
UCLN #488
b8041a7
walterxie added a commit that referenced this issue Oct 3, 2024
@walterxie
Deprecate simpleRelaxedClock.lphy #488
275d7ce
@walterxie walterxie mentioned this issue Oct 3, 2024
Closed
walterxie added a commit that referenced this issue Oct 3, 2024
@walterxie
correct comments #488
20e13d8
walterxie added a commit that referenced this issue Oct 3, 2024
@walterxie
update comments #488
3244152
walterxie added a commit that referenced this issue Oct 4, 2024
@walterxie
Add LPhyBEAST for UCLN #488
05f3236
walterxie added a commit to LinguaPhylo/LPhyBeast that referenced this issue Oct 4, 2024
@walterxie
Add LPhyBEAST for UCLN LinguaPhylo/linguaPhylo#488
3e3c1ef
walterxie added a commit to LinguaPhylo/LPhyBeast that referenced this issue Oct 4, 2024
@walterxie
Add rates prior for UCLN, and TODO for logging LinguaPhylo/linguaPhyl…
17d7c93 
…o#488
walterxie added a commit that referenced this issue Oct 7, 2024
@walterxie
correct XML #488
e23e87e
walterxie added a commit to LinguaPhylo/LPhyBeast that referenced this issue Oct 7, 2024
@walterxie
correct XML LinguaPhylo/linguaPhylo#488
4b9f9fb
walterxie added a commit that referenced this issue Oct 7, 2024
@walterxie
update comments #488
20c2b84
walterxie added a commit that referenced this issue Oct 8, 2024
@walterxie
correct UCLN to fix mean to 1 and use the clock rate (mu) as the expe…
904e980 
…cted mean clock rate #488
walterxie added a commit to LinguaPhylo/LPhyBeast that referenced this issue Oct 8, 2024
@walterxie
correct UCLN to fix mean to 1 and use the clock rate (mu) as the expe…
1128a0d 
…cted mean clock rate LinguaPhylo/linguaPhylo#488
walterxie added a commit to LinguaPhylo/LPhyBeast that referenced this issue Oct 9, 2024
@walterxie
add missing logging in XML for relaxed clock #161 LinguaPhylo/linguaP…
fcaf748 
…hylo#488
walterxie added a commit to LinguaPhylo/LPhyBeast that referenced this issue Oct 9, 2024
@walterxie
if there is a special Tree Logger, then do not log this tree using no…
259e602 
…rmal Tree Logger #161 LinguaPhylo/linguaPhylo#488
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