v0.5.0

Archived for Zenodo

v0.4.2pre

v.0.4.2

• Added function to collapse individual peptide TMT intensities into protein TMT intensities
• Added options to determining parsimony groups in collapsing peptide data into proteins
• Added option to separate proteins into light and heavy groups based on SILAC labels

pyTMT v0.4.1

v.0.4.1

• Added support for TMT 18-plex
• Added non-negative least square method for contamination correction

pyTMT v0.4.0

v.0.4.0

• pyTMT now supports TMT contaminant correction.
• Added support for TMT 16-plex

v.0.3.5

• pyTMT now reads the percolator output log file from crux to assign mzML files to Percolator file_idx
• When no log file is present, pyTMT falls back on the old method of ordering mzML files by file names

v.0.2.8

• input changed from specifying percolator directory to percolator file path
• added preliminary support for standalone percolator output (psms)