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1.7.2 #264
Commits on May 18, 2020
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Feature/koning/vhost no leading slash (#217)
* The broker name can now be amqps (with ssl) or amqp (without ssl). The default rabbitmq vhost is now <user> instead of /<user>. * Undo fix typos. * Fix spacing. * Add amqps conn for self doc.
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Commits on May 19, 2020
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Add inital running workers check to monitor. This should eliminate any (
#218) race conditions.
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Commits on May 26, 2020
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* updated default task timeout * Added to CHANGELOG
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Commits on May 27, 2020
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Feature/koning/create encrypt key init (#219)
* Add init_key to create the encryption key when merlin config is run. * Move import to point of use for encryption.
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Commits on May 28, 2020
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Feature/koning/monitor upgrade (#221)
* Fix sleep variable. * Change another sleep variable. * Change brackets. * Fix clarity for jobs but no consumers condition. * Fix comment. * Update comment. * Move check_merlin_status to router. * Run fix-style.
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Commits on May 29, 2020
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* working on bugfix * achieved desired behavior * made expansion anf filewriting conditional * fixed style * updated CHANGELOG * fixed samples and restart * fixed style * used variable * added name expansion test * temporarily commented out one test * fixed style * added debug block * changes * corrected bug * updated example; scripts are now copied into merlin_info
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Commits on Jun 2, 2020
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Feature/ben/expose visibility timeout (#224)
* exposed visibility timeout in config file * added visibility timeouts to default config files * fixed style * added seconds to clarify name * fixed attribute name * locked celery version at 4.4.2 * updated CHANGELOG
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Feature/koning/info conn timeout (#226)
* Add a timeout check for the merlin info kombu connection test. The redis server will not comply with the connection_timeout config. * Update docs.
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Commits on Jun 3, 2020
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Commits on Jun 11, 2020
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Commits on Jun 16, 2020
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Log sample generation to merlin_info (#234)
* sample generation is now logged to merlin_info * Added to CHANGELOG * fixed style
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Commits on Jun 18, 2020
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* working on adding maestro's schema validation to merlin * updated schemas * adding merlin_schema to spec logic * added debug prints * added print * fixing vestigial Maestro calls * adjusted merlin_schemas * fixed json file * validation progress * added from_dict replacement logic * adjusted maestrowf version req * fixed string * schema improvements * merlinsection schema updates * merlin section error parsing appears to work * updated CHANGELOG * fixed merge error * Added walltime to json schema
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Add the bank and walltime keywords to the batch slurm launch, these (#…
…236) will not alter the lsf launch.
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Bugfix for new celery versions (#231)
* Change the expand_tasks_with_samples task to use an immutable signature, no return code is neccessary. * Change only expand_tasks_with_samples to si() * Increase celery version requirement to the latest (4.4.5). * Update CHANGELOG. Co-authored-by: Benjamin Bay <[email protected]>
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* added tests to run_tests.py * updated merlinsection schema * added full_spec test * added to CHANGELOG
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Commits on Jun 22, 2020
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Commits on Jun 29, 2020
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Commits on Jul 1, 2020
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use regex to find variable tokens (#239)
* now using regex to find variable tokens * added shell ref function
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Commits on Jul 2, 2020
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Revert maestro 1.1.8 support (#241)
* reverted support of Maestro 1.1.8 * removed tests that use maestro validation * fixed style
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fixed cli tests, reactivated 3 old ones (#242)
* fixed cli tests, reactivated 3 old ones * added to CHANGELOG
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More provenance specs + logic improvements (#240)
* added orig.yaml and expanded.yaml * added partial provenance spec * fixed style * added to CHANGELOG * removed comments * made env replacement more precise * fixed restart bug * changed provenance file names * logic update * fixed style * expansion now working * added cli test logic to test all 3 provenance file types * updated CHANGELOG * expansion sans io (#243) * reverted support of Maestro 1.1.8 * removed tests that use maestro validation * fixed style * added sections property to spec * reducing number of file writes and reads * provenance specs are correct * fixed style * removed unused imports * cleaning up logic * fixed style * final logic improvements * removed unused property * updated CHANGELOG
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Commits on Jul 3, 2020
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Commits on Jul 6, 2020
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Commits on Jul 9, 2020
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Docs/ben/level max dirs (#250)
* added to documentation * added to CHANGELOG * added default
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Commits on Jul 14, 2020
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Commits on Jul 15, 2020
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* added basic pgen support * added to CHANGELOG * pgen, pargs, and env appear to work * added to CHANGELOG * fixed typo * added pgen cli test * added faq entry on pgen
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Commits on Jul 16, 2020
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* starting * building pretty_dump function * updates * fixed style * tweaks * valid yaml * added yaml_sections * added to CHANGELOG * removed old yaml representer code * added cli test for equality of provenance specs * fixed pgen test * disabled test while not working * fixed yaml lists for source, paths, git * tweaks / fixes
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* removed expansion of env variables in provenance specs * added to CHANGELOG * corrected unit tests * added todos * working on expand_env_var function * fixed type bug * removed comments, prints, fixed style * added to CHANGELOG * tweaks * fixed output path * allowed study name to use env vars * fixed style * added to CHANGELOG, added support for 'restart' * Update CHANGELOG.md * added docs strings * added to docs * updated comment * fixed CHANGELOG
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Commits on Jul 20, 2020
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* Update flux example workflows to use new kvs query methods. * Update CHANGELOG with fix info. * Add coker fix comment.
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Commits on Jul 21, 2020
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Commits on Jul 22, 2020
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* Update redis to new version with TLS support. * Add changelog.
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Commits on Jul 23, 2020
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* added default app.yaml, still in progress... * added celery defaults * Update app.yaml * config override appears to be working * corrected value name * shifted some properties to be optional defaults * removed unneeded file * improvements * fixed style * fixed style * hid 'no override' message * tweaked var names * added 2 tests for celery app (#246) * fixed test * fixed workers bug * fixed unit tests for running offline * removed 2 unit tests * fixed CHANGELOG * added info print of all celery configurations being overridden
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Commits on Jul 28, 2020
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copy samplesfile to merlin_info (#259)
* copy samplesfile to merlin_info * added to CHANGELOG
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Commits on Aug 3, 2020
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Bugfix/koning/process exceptions (#260)
* Add bugfix log. * Add an exception catcher for the multiprocessing Process class.
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Commits on Aug 4, 2020
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