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update EDGE ABCs and ChangeLog
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Chien-Chi Lo committed Dec 2, 2020
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6 changes: 3 additions & 3 deletions ChangeLog.txt
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-- Version 2020
-- Version 20201130
EDGE 2.4.0
* Update bcftools from 1.6 to 1.10.2
* Update samtools from 1.9 to 1.10
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* Update sratoolskit from 2.8.2 to 2.9.6
* Update JBrowse from 1.12.3 to 1.16.8
* Update Anaconda2 and Anaconda3 to 2019.10 and 2020.02
* Update lrasm from 0.1.0 to 0.2.0 which include new assembler wtdbg2
* Update lrasm from 0.1.0 to 0.3.0 which include new assembler wtdbg2 and (meta)flye
* Update gottcha dmd complier and use conda to install rapsearch2
* Add MaxBin tools for metagenome contig binning
* Add debug flag in auto_run script
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* Add extract reads fastq for Kraken result
* Add Secondary Metabolite Analysis Annotation
* Update Qiime to version 2
* Add wtdbg2 long reads assembly algorithm option
* Add wtdbg2 and (meta)flye long reads assembly algorithm option
* Add Unicycler option for assembly
* Hover to show accession id for genome search result list
* Update final_report.pdf to match with web based summary result page
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Binary file modified edge_ui/docs/EDGE_ABCs.pdf
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2 changes: 1 addition & 1 deletion edge_ui/index.html
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Expand Up @@ -571,7 +571,7 @@ <h4>Batch Project Submission</h4>
<p class="edge_tool_note">Run EDGE with Multiple projects using a tools set configuration. Click <a href="data/BatchExcelExample.xlsx" download="" target="_blank"> Download [Sample File]</a> to see the example. </p>
<div id="edge-batch-input-block1" class="edge-batch-input">
<div class="ui-field-contain input-type-file">
<label for="edge-batch-input-excel-1">Batch Excel File<a href="#" class="tooltip ui-btn ui-nodisc-icon ui-corner-all ui-btn-inline ui-icon-info ui-btn-icon-notext my-tooltip-btn" title='Column headers must be labeled: "Project", "Q1", "Q2", "S", "Description"' for="edge-batch-input-block1"></a></label>
<label for="edge-batch-input-excel-1">Batch Excel File<a href="#" class="tooltip ui-btn ui-nodisc-icon ui-corner-all ui-btn-inline ui-icon-info ui-btn-icon-notext my-tooltip-btn" title='Column headers must be labeled: "Project", "Q1", "Q2", "S", "SAR", "Description"' for="edge-batch-input-block1"></a></label>
<input type="text" data-mini="true" name="edge-batch-input-excel" id="edge-batch-input-excel-1" placeholder="absolute file path/select file">
<div class="edge-file-selector"><a href='#edge_file_dialog' aria-haspopup='true' data-rel='popup' data-position-to='window' data-transition='pop' data-mini="true" class="ui-btn ui-shadow ui-corner-all ui-icon-bullets ui-btn-icon-notext">file</a></div>
</div>
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